RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TRDV1A0A1B0GX56 115 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 TMEM82A0PJX8 343 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 SH2D1BO14796 132 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 HTR3BO95264 441 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 CD37P11049 281 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 GALP22466 123 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 GLT8D1Q68CQ7 371 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 GLIPR1L1Q6UWM5 242 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 OR51T1Q8NGJ9 327 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 FOXRED1Q96CU9 486 aaPredicted RBP13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 SNX22Q96L94 193 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 DMRTB1Q96MA1 342 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 C1orf147Q96MC9 270 aaPredicted RBP13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 EXOSC4Q9NPD3 245 aaKnown RBP13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 C2CD3Q4AC94 2353 aa13.66□□□□□ -0.22
CCDC28A-202ENST00000611852 CCDC160A6NGH7 325 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 PSPNO60542 156 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 ZNF780AO75290 641 aaPredicted RBP13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 OR2H2O95918 312 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 CSTBP04080 98 aaKnown RBP13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 FAM157CP0CG43 387 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 PPIAL4GP0DN37 164 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 SRD5A1P18405 259 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 SERPINA2P20848 420 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 LMO1P25800 156 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 SLC22A6Q4U2R8 563 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 AWAT2Q6E213 333 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 Q6P435 159 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 OR8H2Q8N162 312 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 TEX29Q8N6K0 151 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 TBC1D15Q8TC07 691 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 GFI1Q99684 422 aa13.65□□□□□ -0.22
CCDC28A-202ENST00000611852 TRBV23-1A0A0A0MS06 115 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 A0A1W2PP11 408 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 SIRPB1O00241 398 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 FSHBP01225 129 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 ZNF44P15621 663 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 GABRR1P24046 479 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 SRP14P37108 136 aaKnown RBP13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 PIGYQ3MUY2 71 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 NHLRC3Q5JS37 347 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 C1orf100Q5SVJ3 147 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 FOXB2Q5VYV0 432 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 OSR2Q8N2R0 312 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 OR5D13Q8NGL4 314 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 NANPQ8TBE9 248 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 UPRTQ96BW1 309 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 C19orf12Q9NSK7 152 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 MXRA5Q9NR99 2828 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 A0A0G2JK05 382 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 MMP9P14780 707 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 ARF6P62330 175 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 RPL31P62899 125 aaKnown RBP13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 SCN1BQ07699 218 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 GPR176Q14439 515 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 IL13RA2Q14627 380 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 PDCD1Q15116 288 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 C22orf42Q6IC83 251 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 CHST4Q8NCG5 386 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 OR4S1Q8NGB4 309 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 WDFY2Q96P53 400 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 CHST6Q9GZX3 395 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 SIRPDQ9H106 197 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 PCDHB16Q9NRJ7 776 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 STUB1Q9UNE7 303 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 ST3GAL6Q9Y274 331 aa13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 AK6Q9Y3D8 172 aaKnown RBP13.64□□□□□ -0.23
CCDC28A-202ENST00000611852 JMJD1CQ15652 2540 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 TRAV1-2A0A0B4J238 106 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 A0A1W2PQ09 198 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 SHISA3A0PJX4 238 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 SLC33A1O00400 549 aaPredicted RBP13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 DEGS1O15121 323 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 NOL3O60936 208 aaKnown RBP13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 GTF2F2P13984 249 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 FGF9P31371 208 aaPredicted RBP13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 OR3A1P47881 315 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 RBM11P57052 281 aaKnown RBP13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 GRK1Q15835 563 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 KLF17Q5JT82 389 aaPredicted RBP13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 METTL11BQ5VVY1 283 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 GDPD3Q7L5L3 318 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 OR4M1Q8NGD0 313 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 OR13F1Q8NGS4 319 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 DGCR14Q96DF8 476 aaKnown RBP13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 RBM38Q9H0Z9 239 aaKnown RBP13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 TXNL4BQ9NX01 149 aaKnown RBP13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 ONECUT1Q9UBC0 465 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 GHRLQ9UBU3 117 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 KPTNQ9Y664 436 aa13.63□□□□□ -0.23
CCDC28A-202ENST00000611852 SLC22A1O15245 554 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 TOX4O94842 621 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 CD36P16671 472 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 HTR2CP28335 458 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 RIPPLY3P57055 190 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 TMEM200BQ69YZ2 307 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 FAM185AQ8N0U4 392 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 KIR3DL3Q8N743 410 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 TMEM104Q8NE00 496 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 PPP1R35Q8TAP8 253 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms