RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 EDDM3BP56851 147 aa13.83□□□□□ -0.2
TRIM28-215ENST00000601150 GUCA2AQ02747 115 aa13.83□□□□□ -0.2
TRIM28-215ENST00000601150 NCR3LG1Q68D85 454 aa13.83□□□□□ -0.2
TRIM28-215ENST00000601150 ELP2Q6IA86 826 aa13.83□□□□□ -0.2
TRIM28-215ENST00000601150 ASCL4Q6XD76 172 aa13.83□□□□□ -0.2
TRIM28-215ENST00000601150 MS4A15Q8N5U1 240 aa13.83□□□□□ -0.2
TRIM28-215ENST00000601150 ZDHHC22Q8N966 263 aa13.83□□□□□ -0.2
TRIM28-215ENST00000601150 PPP1R35Q8TAP8 253 aa13.83□□□□□ -0.2
TRIM28-215ENST00000601150 UNKLQ9H9P5 680 aaKnown RBP13.83□□□□□ -0.2
TRIM28-215ENST00000601150 FOXJ3Q9UPW0 622 aa13.83□□□□□ -0.2
TRIM28-215ENST00000601150 SIRPB1O00241 398 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 PSPNO60542 156 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 OR2H2O95918 312 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 PRTN3P24158 256 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 EEF1B2P24534 225 aaKnown RBP13.82□□□□□ -0.2
TRIM28-215ENST00000601150 BAMBIQ13145 260 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 GPR50Q13585 617 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 EDDM3AQ14507 147 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 RSU1Q15404 277 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 GRK1Q15835 563 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 DEFB112Q30KQ8 113 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 PDZD9Q8IXQ8 264 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 UFD1Q92890 307 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 ZDHHC16Q969W1 377 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 NKX3-1Q99801 234 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-215ENST00000601150 TMED9Q9BVK6 235 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 CHST6Q9GZX3 395 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 ISYNA1Q9NPH2 558 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 NOX4Q9NPH5 578 aa13.82□□□□□ -0.2
TRIM28-215ENST00000601150 MDFIC2A0A1B0GVS7 189 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 hCG_1809904A0A1W2PP81 198 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 A0A1W2PPE2 198 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 A0A1W2PR64 198 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 A0A1W2PRV1 198 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 MAGEA13PA6NCF6 341 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 DNAJC9-AS1A6NH13 148 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 RNASEK-C17orf49H0YIS7 233 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 MGST3O14880 152 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 PIN1P1O15428 100 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 DENRO43583 198 aaKnown RBP13.81□□□□□ -0.2
TRIM28-215ENST00000601150 ZNF44P15621 663 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 LMO1P25800 156 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 OR3A1P47881 315 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 DLX1P56177 255 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 UBA52P62987 128 aaKnown RBP13.81□□□□□ -0.2
TRIM28-215ENST00000601150 PRB3Q04118 309 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-215ENST00000601150 MEF2CQ06413 473 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-215ENST00000601150 SCN1BQ07699 218 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 KLRD1Q13241 179 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 ZNF273Q14593 569 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 ACSM3Q53FZ2 586 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 Q6P435 159 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 UNQ9370/PRO34162Q6UXP9 181 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 CDH26Q8IXH8 852 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 CHST4Q8NCG5 386 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 Q8NFD4 153 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 OR4S1Q8NGB4 309 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 TNFRSF14Q92956 283 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 S100A13Q99584 98 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 METTL9Q9H1A3 318 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 PRDM13Q9H4Q3 707 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 ZMAT3Q9HA38 289 aaKnown RBP13.81□□□□□ -0.2
TRIM28-215ENST00000601150 IL36GQ9NZH8 169 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 ING4Q9UNL4 249 aa13.81□□□□□ -0.2
TRIM28-215ENST00000601150 hADV38S2A0JD32 116 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 DEGS1O15121 323 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 CDRT1O95170 752 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 HTR3BO95264 441 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 HSMCR30P0CW71 290 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 CCL3L1P16619 93 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 MAP2K4P45985 399 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 TPBGQ13641 420 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 LIPKQ5VXJ0 399 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 JAGN1Q8N5M9 183 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-215ENST00000601150 OR51T1Q8NGJ9 327 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 OR10K1Q8NGX5 313 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 SPATA3Q8NHX4 192 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 FAM216AQ8WUB2 273 aa13.8□□□□□ -0.2
TRIM28-215ENST00000601150 NR1H4Q96RI1 486 aaPredicted RBP13.8□□□□□ -0.2
TRIM28-215ENST00000601150 A0A0G2JK05 382 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 NPFFO15130 113 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 CSTBP04080 98 aaKnown RBP13.79□□□□□ -0.2
TRIM28-215ENST00000601150 MAS1P04201 325 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 ZNF728P0DKX0 622 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 ERP29P30040 261 aaKnown RBP13.79□□□□□ -0.2
TRIM28-215ENST00000601150 UBE2E1P51965 193 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 DLX6P56179 175 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 P2RX3P56373 397 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 GABARAPL2P60520 117 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 MLLT11Q13015 90 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-215ENST00000601150 IL13RA2Q14627 380 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 INSL4Q14641 139 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 TBCEQ15813 527 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-215ENST00000601150 PIP4P2Q8N4L2 257 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 C11orf42Q8N5U0 333 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 NKAIN3Q8N8D7 197 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 C1orf147Q96MC9 270 aaPredicted RBP13.79□□□□□ -0.2
TRIM28-215ENST00000601150 MGLLQ99685 303 aa13.79□□□□□ -0.2
TRIM28-215ENST00000601150 PPA2Q9H2U2 334 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms