RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 LPLP06858 475 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 CD3GP09693 182 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 COX6B1P14854 86 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 DUSP1P28562 367 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 SSBP1Q04837 148 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 RNASE12Q5GAN4 147 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 NKAPLQ5M9Q1 402 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 FIP1L1Q6UN15 594 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 HPS1Q92902 700 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 SULT4A1Q9BR01 284 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 SPACA1Q9HBV2 294 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 DCAF16Q9NXF7 216 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 MTFP1Q9UDX5 166 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 TBC1D24Q9ULP9 559 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 NPTNQ9Y639 398 aa12.38□□□□□ -0.43
SHKBP1-211ENST00000595945 ABCA12Q86UK0 2595 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 ISPDA4D126 451 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 SH2D1BO14796 132 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 ORC5O43913 435 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 HAND1O96004 215 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 LMO1P25800 156 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 CD80P33681 288 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 GDNFP39905 211 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 GMFBP60983 142 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 IKZF1Q13422 519 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 TEX36Q5VZQ5 186 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 TRIQKQ629K1 86 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 SUMF2Q8NBJ7 301 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 NUDCD2Q8WVJ2 157 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 VRK1Q99986 396 aaPredicted RBP12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 FAAP24Q9BTP7 215 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 CACNG6Q9BXT2 260 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 PLEKHJ1Q9NW61 149 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 NLKQ9UBE8 527 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 KLK11Q9UBX7 282 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 ZNF222Q9UK12 451 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 WIPI2Q9Y4P8 454 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 CACNG2Q9Y698 323 aa12.37□□□□□ -0.43
SHKBP1-211ENST00000595945 LRRC30A6NM36 301 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 TMEM178BH3BS89 294 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 SLC33A1O00400 549 aaPredicted RBP12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 DEGS1O15121 323 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 PLA2G10O15496 165 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 OR2H2O95918 312 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 PSG2P11465 335 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 GNG2P59768 71 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 SCN1BQ07699 218 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 ASAH1Q13510 395 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 KLF9Q13886 244 aaPredicted RBP12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 FAM201AQ5SY85 155 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 ATAD3CQ5T2N8 411 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 SHEQ5VZ18 495 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 C20orf204Q6ZNR8 217 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 ZNF295-AS1Q8N0V1 137 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 CD177Q8N6Q3 437 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 SETD6Q8TBK2 473 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 NEU4Q8WWR8 484 aaPredicted RBP12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 OCSTAMPQ9BR26 566 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 RAB1BQ9H0U4 201 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 CLEC4MQ9H2X3 399 aaPredicted RBP12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 TMEM106BQ9NUM4 274 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 AK3Q9UIJ7 227 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 LAMP3Q9UQV4 416 aa12.36□□□□□ -0.43
SHKBP1-211ENST00000595945 ANKRD17O75179 2603 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 IGKV1D-17A0A075B6S4 117 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 IGHV3OR15-7A0A075B7D8 119 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 IGHV1-69-2A0A0G2JMI3 117 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 ANKRD20A5PA0PJZ0 165 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 RFPL4AA6NLU0 287 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 RFPL4AL1F8VTS6 287 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 OVOL3O00110 214 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 LGALS8O00214 317 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 RBBP9O75884 186 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 IRF2P14316 349 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 ZNF44P15621 663 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 NAT1P18440 290 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 CBX5P45973 191 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 CEBPDP49716 269 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 MRPS11P82912 194 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 STUMQ69YW2 141 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 BRICD5Q6PL45 260 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 TRAPPC6BQ86SZ2 158 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 C1orf87Q8N0U7 546 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 BOLLQ8N9W6 283 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 C19orf18Q8NEA5 215 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 DPCDQ9BVM2 203 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 TREM2Q9NZC2 230 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 OR14J1Q9UGF5 321 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 GLS2Q9UI32 602 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 ZNF107Q9UII5 783 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 TACC2O95359 2948 aa12.35□□□□□ -0.43
SHKBP1-211ENST00000595945 UBE2QL1A1L167 161 aa12.34□□□□□ -0.43
SHKBP1-211ENST00000595945 MEIS3P1A6NDR6 274 aa12.34□□□□□ -0.43
SHKBP1-211ENST00000595945 OOEPA6NGQ2 149 aa12.34□□□□□ -0.43
SHKBP1-211ENST00000595945 OR2AT4A6NND4 320 aa12.34□□□□□ -0.43
SHKBP1-211ENST00000595945 SIRPB1O00241 398 aa12.34□□□□□ -0.43
SHKBP1-211ENST00000595945 RP2O75695 350 aa12.34□□□□□ -0.43
SHKBP1-211ENST00000595945 NAPSAO96009 420 aa12.34□□□□□ -0.43
SHKBP1-211ENST00000595945 MUC1P15941 1255 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-211ENST00000595945 AMY2BP19961 511 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms