RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 IL36RNQ9UBH0 155 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 LRRC42Q9Y546 428 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 SVEP1Q4LDE5 3571 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 hCG_1809904A0A1W2PP81 198 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 A0A1W2PPE2 198 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 A0A1W2PR64 198 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 A0A1W2PRV1 198 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 DEGS1O15121 323 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 PIN1P1O15428 100 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 OR2H2O95918 312 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 CSTBP04080 98 aaKnown RBP12.36□□□□□ -0.43
UPF1-202ENST00000594243 CPEP16870 476 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 OR3A4PP47883 348 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 EDDM3BP56851 147 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 GPR176Q14439 515 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 GRK1Q15835 563 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 TMEM200BQ69YZ2 307 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 METAP1DQ6UB28 335 aaPredicted RBP12.36□□□□□ -0.43
UPF1-202ENST00000594243 C17orf107Q6ZR85 190 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 ZNF367Q7RTV3 350 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 CEACAM19Q7Z692 300 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 SVOPQ8N4V2 548 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 NKAIN3Q8N8D7 197 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 CHST4Q8NCG5 386 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 Q8NFD4 153 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 OR4M1Q8NGD0 313 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 OR51T1Q8NGJ9 327 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 TMEM158Q8WZ71 300 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 METTL8Q9H825 291 aaKnown RBP12.36□□□□□ -0.43
UPF1-202ENST00000594243 ACOT13Q9NPJ3 140 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 IL36GQ9NZH8 169 aa12.36□□□□□ -0.43
UPF1-202ENST00000594243 DOCK11Q5JSL3 2073 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 A0A0G2JK05 382 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 TMEM82A0PJX8 343 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 FUOMA2VDF0 154 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 MGST3O14880 152 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 PSPNO60542 156 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 SC5DO75845 299 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 HTR3BO95264 441 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 ZNF44P15621 663 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 HILS1P60008 231 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 GUCA2AQ02747 115 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 EMX1Q04741 257 aaPredicted RBP12.35□□□□□ -0.43
UPF1-202ENST00000594243 MEF2CQ06413 473 aaPredicted RBP12.35□□□□□ -0.43
UPF1-202ENST00000594243 SCN1BQ07699 218 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 PHC2Q8IXK0 858 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 BCL6BQ8N143 479 aaPredicted RBP12.35□□□□□ -0.43
UPF1-202ENST00000594243 JAGN1Q8N5M9 183 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 Q8N7P7 452 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 PHYHIPQ92561 330 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 TMEM203Q969S6 136 aa12.35□□□□□ -0.43
UPF1-202ENST00000594243 FOXRED1Q96CU9 486 aaPredicted RBP12.35□□□□□ -0.43
UPF1-202ENST00000594243 NR1H4Q96RI1 486 aaPredicted RBP12.35□□□□□ -0.43
UPF1-202ENST00000594243 UNKLQ9H9P5 680 aaKnown RBP12.35□□□□□ -0.43
UPF1-202ENST00000594243 IGHV1-69DA0A0B4J2H0 117 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 hADV38S2A0JD32 116 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 SIRPB1O00241 398 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 CDRT1O95170 752 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 IGHV1-69P01742 117 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 SRMP19623 302 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 PRTN3P24158 256 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 ERP29P30040 261 aaKnown RBP12.34□□□□□ -0.43
UPF1-202ENST00000594243 IL13RA2Q14627 380 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 INSL4Q14641 139 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 TUSC1Q2TAM9 212 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 HSD17B12Q53GQ0 312 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 NCR3LG1Q68D85 454 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 Q6P435 159 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 BRD3OSQ6XYD6 125 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 OSR2Q8N2R0 312 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 OR4S1Q8NGB4 309 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 OR10K1Q8NGX5 313 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 NKX3-1Q99801 234 aaPredicted RBP12.34□□□□□ -0.43
UPF1-202ENST00000594243 UQCC2Q9BRT2 126 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 CHST6Q9GZX3 395 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 SLITRK2Q9H156 845 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 SIRT7Q9NRC8 400 aa12.34□□□□□ -0.43
UPF1-202ENST00000594243 FBN1P35555 2871 aaKnown RBP12.33□□□□□ -0.44
UPF1-202ENST00000594243 MAGEA13PA6NCF6 341 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 RNF212BA8MTL3 300 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 ARL6IP5O75915 188 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 RGS9O75916 674 aaPredicted RBP12.33□□□□□ -0.44
UPF1-202ENST00000594243 VENTXO95231 258 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 UCHL1P09936 223 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 GTF2F2P13984 249 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 GABRA5P31644 462 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 RPS25P62851 125 aaKnown RBP12.33□□□□□ -0.44
UPF1-202ENST00000594243 EDDM3AQ14507 147 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 GLT8D1Q68CQ7 371 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 SPARTQ8N0X7 666 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 SIGLECL1Q8N7X8 197 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 ZFAND2BQ8WV99 257 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 FCGR1BQ92637 280 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 MUL1Q969V5 352 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 MRPS24Q96EL2 167 aaKnown RBP12.33□□□□□ -0.44
UPF1-202ENST00000594243 MDFIQ99750 246 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 GHRLQ9UBU3 117 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 ST3GAL6Q9Y274 331 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 MRPS28Q9Y2Q9 187 aaKnown RBP12.33□□□□□ -0.44
UPF1-202ENST00000594243 SF3B6Q9Y3B4 125 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms