RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 C8orf59Q8N0T1 100 aaPredicted RBP8.56□□□□□ -1.04
LIG3-212ENST00000590181 C11orf42Q8N5U0 333 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 ZNF565Q8N9K5 539 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 Q8NFD4 153 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 RPS4Y2Q8TD47 263 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 WFDC12Q8WWY7 111 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 SLAMF9Q96A28 289 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 ZNF488Q96MN9 340 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 ZNF714Q96N38 554 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 EXOSC4Q9NPD3 245 aaKnown RBP8.56□□□□□ -1.04
LIG3-212ENST00000590181 TMEM138Q9NPI0 162 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 C19orf12Q9NSK7 152 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 C1RLQ9NZP8 487 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 CKLFQ9UBR5 152 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 FBLN5Q9UBX5 448 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 ZNF281Q9Y2X9 895 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 MINOS1-NBL1R4GNA1 71 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 KIAA2026Q5HYC2 2103 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 TRGV10A0A0A0MS01 117 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 HCKP08631 526 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 IGHV1-8P0DP01 117 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 TMEM225BP0DP42 221 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 PRKACAP17612 351 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 OMGP23515 440 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 DLX6P56179 175 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 EDDM3BP56851 147 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 PPP3R1P63098 170 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 ELF3P78545 371 aaPredicted RBP8.55□□□□□ -1.04
LIG3-212ENST00000590181 ADARB1P78563 741 aaKnown RBP8.55□□□□□ -1.04
LIG3-212ENST00000590181 CDK5R1Q15078 307 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 GRK1Q15835 563 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 YIF1BQ5BJH7 314 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 DMRTC1Q5HYR2 192 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 DHRS7BQ6IAN0 325 aaPredicted RBP8.55□□□□□ -1.04
LIG3-212ENST00000590181 ASCL4Q6XD76 172 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 SLC16A12Q6ZSM3 486 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 FGFRL1Q8N441 504 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 OR51T1Q8NGJ9 327 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 TSEN15Q8WW01 171 aaKnown RBP8.55□□□□□ -1.04
LIG3-212ENST00000590181 APH1BQ8WW43 257 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 CYGBQ8WWM9 190 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 SMIM19Q96E16 107 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 S100A13Q99584 98 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 IFT22Q9H7X7 185 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 ISG20L2Q9H9L3 353 aaKnown RBP8.55□□□□□ -1.04
LIG3-212ENST00000590181 AMBNQ9NP70 447 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 IL36GQ9NZH8 169 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 OR6C3Q9NZP0 311 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 RNF114Q9Y508 228 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 SESN1Q9Y6P5 492 aa8.55□□□□□ -1.04
LIG3-212ENST00000590181 MDFIC2A0A1B0GVS7 189 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 ERICH4A6NGS2 130 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 DEGS1O15121 323 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 IGHV4-59P01825 116 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 BCL3P20749 454 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 GABRR1P24046 479 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 MAPK3P27361 379 aaPredicted RBP8.54□□□□□ -1.04
LIG3-212ENST00000590181 CAPGP40121 348 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 CEACAM3P40198 252 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 KIR2DS4P43632 304 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 POU3F4P49335 361 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 P2RX3P56373 397 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 BDH1Q02338 343 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 SRSF4Q08170 494 aaKnown RBP8.54□□□□□ -1.04
LIG3-212ENST00000590181 IL13RA2Q14627 380 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 RCN1Q15293 331 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 NHLRC3Q5JS37 347 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 OGFRL1Q5TC84 451 aaPredicted RBP8.54□□□□□ -1.04
LIG3-212ENST00000590181 ZNF626Q68DY1 528 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 HIST2H2BDQ6DRA6 164 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 HCP5Q6MZN7 132 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 BRICD5Q6PL45 260 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 HEPN1Q6WQI6 88 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 C16orf82Q7Z2V1 217 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 OR10A7Q8NGE5 316 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 OR13C9Q8NGT0 318 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 ZNF596Q8TC21 504 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 TMEM106AQ96A25 262 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 MRPS24Q96EL2 167 aaKnown RBP8.54□□□□□ -1.04
LIG3-212ENST00000590181 GPER1Q99527 375 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 SSX3Q99909 188 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 BARHL1Q9BZE3 327 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 MMP27Q9H306 513 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 VCX3BQ9H321 246 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 RAB9BQ9NP90 201 aa8.54□□□□□ -1.04
LIG3-212ENST00000590181 MEGF11A6BM72 1044 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 ZNF729A6NN14 1252 aaPredicted RBP8.53□□□□□ -1.04
LIG3-212ENST00000590181 ODF3BA8MYP8 253 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 OOSP1A8MZH6 123 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 F8VVB4 439 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 F8VWA3 439 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 M0QZ24 198 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 OR2H2O95918 312 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 GZMHP20718 246 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 C21orf33P30042 268 aaPredicted RBP8.53□□□□□ -1.04
LIG3-212ENST00000590181 PTGFRP43088 359 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 NPBWR2P48146 333 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 ETV1P50549 477 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 PRRX1P54821 245 aa8.53□□□□□ -1.04
LIG3-212ENST00000590181 ST3GAL4Q11206 333 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms