RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TSSC4Q9Y5U2 329 aaPredicted RBP16.84■□□□□ 0.29
VPS53-216ENST00000574029 E9PQ18 207 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 EI24O14681 340 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 ENTPD6O75354 484 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 MPIG6BO95866 241 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 BCL3P20749 454 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 HTR1FP30939 366 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 BRS3P32247 399 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 RBP2P50120 134 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 ATP1B3P54709 279 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 BDH1Q02338 343 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 SPIN3Q5JUX0 258 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 OR52W1Q6IF63 320 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 TRAPPC6BQ86SZ2 158 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 RTN4RL2Q86UN3 420 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 ABHD12Q8N2K0 398 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 STMN2Q93045 179 aa16.83■□□□□ 0.28
VPS53-216ENST00000574029 IGKV1-9A0A0C4DH69 117 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 TCRBV4S1A1TA0A5B7 111 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 K7EIL1 84 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 CYB5AP00167 134 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 CD24P25063 80 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 CDC42P60953 191 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 SLC35A2P78381 396 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 BAIAP2L2Q6UXY1 529 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 CBR4Q8N4T8 237 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 ZNF596Q8TC21 504 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 CORO2AQ92828 525 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 MYDGFQ969H8 173 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 RIBC2Q9H4K1 309 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 GLS2Q9UI32 602 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 ORC6Q9Y5N6 252 aa16.82■□□□□ 0.28
VPS53-216ENST00000574029 LOC107986453A0A1B0GWG9 222 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 APOL3O95236 402 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 IGLV1-47P01700 117 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 PF4P02776 101 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 UBCP0CG48 685 aaKnown RBP16.81■□□□□ 0.28
VPS53-216ENST00000574029 CALCBP10092 127 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 PRKACAP17612 351 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 KIR3DL2P43630 455 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 POU3F4P49335 361 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 ISL1P61371 349 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 VAX1Q5SQQ9 334 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 PRAMEF5Q5TYX0 476 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 HEPN1Q6WQI6 88 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 RDH10Q8IZV5 341 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 OR10H4Q8NGA5 316 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 RNF166Q96A37 237 aaPredicted RBP16.81■□□□□ 0.28
VPS53-216ENST00000574029 ADAT3Q96EY9 351 aaPredicted RBP16.81■□□□□ 0.28
VPS53-216ENST00000574029 RCC1LQ96I51 464 aaKnown RBP16.81■□□□□ 0.28
VPS53-216ENST00000574029 HRASLS5Q96KN8 279 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 RBM14Q96PK6 669 aaKnown RBP16.81■□□□□ 0.28
VPS53-216ENST00000574029 SLC29A1Q99808 456 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 SLC25A33Q9BSK2 321 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 GAL3ST2Q9H3Q3 398 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 HMG20AQ9NP66 347 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 HHLA2Q9UM44 414 aa16.81■□□□□ 0.28
VPS53-216ENST00000574029 TRGV10A0A0A0MS01 117 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 LEUTXA8MZ59 168 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 SIRPB1O00241 398 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 OR2F2O95006 317 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 AMY1AP04745 511 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 AMY2AP04746 511 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 LPLP06858 475 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 ATF1P18846 271 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 CD34P28906 385 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 SNU13P55769 128 aaKnown RBP16.8■□□□□ 0.28
VPS53-216ENST00000574029 MTCP1P56278 107 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 ABCA11PQ4W5N1 156 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 UTS2BQ765I0 119 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 OR8J1Q8NGP2 316 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 CAPSLQ8WWF8 208 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 TRUB1Q8WWH5 349 aaKnown RBP16.8■□□□□ 0.28
VPS53-216ENST00000574029 TAS2R3Q9NYW6 316 aa16.8■□□□□ 0.28
VPS53-216ENST00000574029 NBEAL2Q6ZNJ1 2754 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 SH2D1BO14796 132 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 DUS4LO95620 317 aaKnown RBP16.79■□□□□ 0.28
VPS53-216ENST00000574029 BAG2O95816 211 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 OR2H2O95918 312 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 PRKACBP22694 351 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 CDK2P24941 298 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 LMO1P25800 156 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 GDNFP39905 211 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 ARHGDIBP52566 201 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 ZNF85Q03923 595 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 PDZK1IP1Q13113 114 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 TMED1Q13445 227 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 LHFPL2Q6ZUX7 228 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 OR4X2Q8NGF9 303 aa16.79■□□□□ 0.28
VPS53-216ENST00000574029 EXOSC4Q9NPD3 245 aaKnown RBP16.79■□□□□ 0.28
VPS53-216ENST00000574029 FUOMA2VDF0 154 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 ANKRD65E5RJM6 399 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 KRTAP10-11P60412 298 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 TP53I3Q53FA7 332 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 TMEM244Q5VVB8 128 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 C10orf99Q6UWK7 81 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 FAM220AQ7Z4H9 259 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 EME1Q96AY2 570 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 CREB3L1Q96BA8 519 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 COMMD4Q9H0A8 199 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms