RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CASQ2O14958 399 aaPredicted RBP6.63□□□□□ -1.35
VPS53-214ENST00000572607 SPRY1O43609 319 aaPredicted RBP6.63□□□□□ -1.35
VPS53-214ENST00000572607 TMEM225BP0DP42 221 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 ZNF44P15621 663 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 BCL3P20749 454 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 SAA4P35542 130 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 SOX2P48431 317 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 ETV1P50549 477 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 BMXP51813 675 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 GTF2A1P52655 376 aaPredicted RBP6.63□□□□□ -1.35
VPS53-214ENST00000572607 LGALS4P56470 323 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 RPL15P61313 204 aaKnown RBP6.63□□□□□ -1.35
VPS53-214ENST00000572607 PPP3R1P63098 170 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 ADARB1P78563 741 aaKnown RBP6.63□□□□□ -1.35
VPS53-214ENST00000572607 PRB3Q04118 309 aaPredicted RBP6.63□□□□□ -1.35
VPS53-214ENST00000572607 SLC34A1Q06495 639 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 GABPB1Q06547 395 aaPredicted RBP6.63□□□□□ -1.35
VPS53-214ENST00000572607 KLRD1Q13241 179 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 EDDM3AQ14507 147 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 CDK5R1Q15078 307 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 GRK1Q15835 563 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 TMEM200BQ69YZ2 307 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 GDPGP1Q6ZNW5 385 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 SAXO1Q8IYX7 474 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 STX19Q8N4C7 294 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 PARP16Q8N5Y8 322 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 OR4F5Q8NH21 305 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 OR5R1Q8NH85 324 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 DYRK2Q92630 601 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 S100A13Q99584 98 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 ZNF649Q9BS31 505 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 CHIAQ9BZP6 476 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 FAM192AQ9GZU8 254 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 UNKLQ9H9P5 680 aaKnown RBP6.63□□□□□ -1.35
VPS53-214ENST00000572607 SEBOXQ9HB31 216 aaPredicted RBP6.63□□□□□ -1.35
VPS53-214ENST00000572607 BEX1Q9HBH7 125 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 BABAM2Q9NXR7 383 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 ZNRD1Q9P1U0 126 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 CKLFQ9UBR5 152 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 GSTK1Q9Y2Q3 226 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 RNF114Q9Y508 228 aa6.63□□□□□ -1.35
VPS53-214ENST00000572607 F8VVB4 439 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 F8VWA3 439 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 SIRPB1O00241 398 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 SH2D1BO14796 132 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 MGST3O14880 152 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 ZNF737O75373 536 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 KDM4BO94953 1096 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 IGHV4-59P01825 116 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 CCL3L1P16619 93 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 COX7A1P24310 79 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 DUSP1P28562 367 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 IER3P46695 156 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 NPBWR2P48146 333 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 MTNR1BP49286 362 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 RAG2P55895 527 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 TAS2R43P59537 309 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 MEF2CQ06413 473 aaPredicted RBP6.62□□□□□ -1.35
VPS53-214ENST00000572607 SCN1BQ07699 218 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 ZNF273Q14593 569 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 ZNF146Q15072 292 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 KISS1Q15726 138 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 MIDNQ504T8 468 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 OR2G6Q5TZ20 316 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 C17orf107Q6ZR85 190 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 TRAPPC6BQ86SZ2 158 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 SATL1Q86VE3 508 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 CHST4Q8NCG5 386 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 BPIFB6Q8NFQ5 453 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 OR13D1Q8NGV5 346 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 OR52N1Q8NH53 320 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 TNFAIP8L1Q8WVP5 186 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 TNFRSF14Q92956 283 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 TMEM106AQ96A25 262 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 SMIM19Q96E16 107 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 ZNF714Q96N38 554 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 SPACA5Q96QH8 159 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 ZNF747Q9BV97 191 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 CHST6Q9GZX3 395 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 VCX3BQ9H321 246 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 HMG20AQ9NP66 347 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 TAS2R4Q9NYW5 299 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 CNOT2Q9NZN8 540 aaKnown RBP6.62□□□□□ -1.35
VPS53-214ENST00000572607 ZNF281Q9Y2X9 895 aa6.62□□□□□ -1.35
VPS53-214ENST00000572607 TRGV10A0A0A0MS01 117 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 TMEM82A0PJX8 343 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 ERICH4A6NGS2 130 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 H0YHG0 523 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 DEGS1O15121 323 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 GPR137BO60478 399 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 RBP4P02753 201 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 ZNF728P0DKX0 622 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 CALCBP10092 127 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 OMGP23515 440 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 DLX1P56177 255 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 P2RX3P56373 397 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 ST3GAL4Q11206 333 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 RSU1Q15404 277 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 YIF1BQ5BJH7 314 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 DHRS7BQ6IAN0 325 aaPredicted RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms