RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RBM14Q96PK6 669 aaKnown RBP8.78□□□□□ -1
VPS53-207ENST00000570510 RIBC2Q9H4K1 309 aa8.78□□□□□ -1
VPS53-207ENST00000570510 MRPS18AQ9NVS2 196 aaKnown RBP8.78□□□□□ -1
VPS53-207ENST00000570510 DNAJC27Q9NZQ0 273 aa8.78□□□□□ -1
VPS53-207ENST00000570510 OR14J1Q9UGF5 321 aa8.78□□□□□ -1
VPS53-207ENST00000570510 ZNF222Q9UK12 451 aa8.78□□□□□ -1
VPS53-207ENST00000570510 CSMD3Q7Z407 3707 aa8.78□□□□□ -1
VPS53-207ENST00000570510 IRGMA1A4Y4 181 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 SERPINE3A8MV23 424 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 ZNF732B4DXR9 585 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 RBP4P02753 201 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 KRT8P05787 483 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 GNG3P63215 75 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 LDLRAD2Q5SZI1 272 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 TTC23Q5W5X9 447 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 COMMD1Q8N668 190 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 ASCC1Q8N9N2 400 aaKnown RBP8.77□□□□□ -1.01
VPS53-207ENST00000570510 RHOXF1Q8NHV9 184 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 FAM81AQ8TBF8 368 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 RAX2Q96IS3 184 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 APOL4Q9BPW4 351 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 FAM206AQ9NX38 181 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 SNX5Q9Y5X3 404 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 R4GMQ9 66 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 HSPE1-MOB4S4R3N1 261 aa8.77□□□□□ -1.01
VPS53-207ENST00000570510 LOC100130705A0A1B0GUX0 176 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 METTL15A6NJ78 407 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 SLC25A17O43808 307 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 SRSF10O75494 262 aaKnown RBP8.76□□□□□ -1.01
VPS53-207ENST00000570510 DHRS3O75911 302 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 NXPH2O95156 264 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 TK1P04183 234 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 SNRNP70P08621 437 aaKnown RBP8.76□□□□□ -1.01
VPS53-207ENST00000570510 FRMD6-AS1P0C7T7 363 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 CCL1P22362 96 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 ATP6V1E1P36543 226 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 POLR2IP36954 125 aaKnown RBP8.76□□□□□ -1.01
VPS53-207ENST00000570510 CXCR4P61073 352 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 RAB40BQ12829 278 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 ZNF684Q5T5D7 378 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 FDX2Q6P4F2 183 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 HAGHLQ6PII5 290 aaPredicted RBP8.76□□□□□ -1.01
VPS53-207ENST00000570510 ACP7Q6ZNF0 438 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 LCNL1Q6ZST4 164 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 GDPD3Q7L5L3 318 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 ELMOD2Q8IZ81 293 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 CD177Q8N6Q3 437 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 ZNF555Q8NEP9 628 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 OR5A2Q8NGI9 324 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 ZNF714Q96N38 554 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 AMELYQ99218 206 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 JAM3Q9BX67 310 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 CLEC7AQ9BXN2 247 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 VCXQ9H320 206 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 DCLRE1BQ9H816 532 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 SMPD3Q9NY59 655 aaPredicted RBP8.76□□□□□ -1.01
VPS53-207ENST00000570510 EXOGQ9Y2C4 368 aaKnown RBP8.76□□□□□ -1.01
VPS53-207ENST00000570510 RPL36Q9Y3U8 105 aaKnown RBP8.76□□□□□ -1.01
VPS53-207ENST00000570510 GMPPBQ9Y5P6 360 aa8.76□□□□□ -1.01
VPS53-207ENST00000570510 SIRT4Q9Y6E7 314 aaPredicted RBP8.76□□□□□ -1.01
VPS53-207ENST00000570510 IGHV2-26A0A0B4J1V2 119 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 OR5B21A6NL26 309 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 LOC110117498-PIK3R3F6TDL0 507 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 H0YJX3 145 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 J3QRE1 110 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 DLGAP1O14490 977 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 CASQ2O14958 399 aaPredicted RBP8.75□□□□□ -1.01
VPS53-207ENST00000570510 FADS2O95864 444 aaKnown RBP8.75□□□□□ -1.01
VPS53-207ENST00000570510 GABRB1P18505 474 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 CCR9P51686 369 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 ISL1P61371 349 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 RIPPLY1Q0D2K3 151 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 DEFB136Q30KP8 78 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 CEP78Q5JTW2 689 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 SYS1Q8N2H4 156 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 ACBD7Q8N6N7 88 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 SETD9Q8NE22 299 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 OR8B12Q8NGG6 310 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 RBMXL1Q96E39 390 aaKnown RBP8.75□□□□□ -1.01
VPS53-207ENST00000570510 RNFT2Q96EX2 444 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 NOL4LQ96MY1 436 aaPredicted RBP8.75□□□□□ -1.01
VPS53-207ENST00000570510 PBOV1Q9GZY1 135 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 OR51I2Q9H344 312 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 FAM118AQ9NWS6 357 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 DPM3Q9P2X0 92 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 SCOCQ9UIL1 159 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 IKZF2Q9UKS7 526 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 SESN1Q9Y6P5 492 aa8.75□□□□□ -1.01
VPS53-207ENST00000570510 A0A1W2PQL4 384 aaPredicted RBP8.74□□□□□ -1.01
VPS53-207ENST00000570510 hADV38S2A0JD32 116 aa8.74□□□□□ -1.01
VPS53-207ENST00000570510 LEUTXA8MZ59 168 aa8.74□□□□□ -1.01
VPS53-207ENST00000570510 ISG15P05161 165 aa8.74□□□□□ -1.01
VPS53-207ENST00000570510 UBCP0CG48 685 aaKnown RBP8.74□□□□□ -1.01
VPS53-207ENST00000570510 FAM106CPP0CH98 169 aa8.74□□□□□ -1.01
VPS53-207ENST00000570510 CEACAM3P40198 252 aa8.74□□□□□ -1.01
VPS53-207ENST00000570510 MNDAP41218 407 aa8.74□□□□□ -1.01
VPS53-207ENST00000570510 INSL3P51460 131 aa8.74□□□□□ -1.01
VPS53-207ENST00000570510 DLX6P56179 175 aa8.74□□□□□ -1.01
VPS53-207ENST00000570510 CEACAM21Q3KPI0 293 aa8.74□□□□□ -1.01
VPS53-207ENST00000570510 TMEM42Q69YG0 159 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms