RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 DOK4Q8TEW6 326 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ZNF418Q8TF45 676 aaPredicted RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 TMEM174Q8WUU8 243 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TSLPQ969D9 159 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 CXorf40BQ96DE9 158 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 VSTM2LQ96N03 204 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 SIGLEC12Q96PQ1 595 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TBX15Q96SF7 602 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 GPA33Q99795 319 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 MICU1Q9BPX6 476 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 GINS3Q9BRX5 216 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ZNF649Q9BS31 505 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ULBP2Q9BZM5 246 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 LPAR5Q9H1C0 372 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 GTSF1LQ9H1H1 148 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 FZD8Q9H461 694 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 MOB1AQ9H8S9 216 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TAF9BQ9HBM6 251 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 APMAPQ9HDC9 416 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 PARP11Q9NR21 331 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 INPP5EQ9NRR6 644 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ARL15Q9NXU5 204 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TAS2R16Q9NYV7 291 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 SHPKQ9UHJ6 478 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ZNF107Q9UII5 783 aaPredicted RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 TRAPPC2LQ9UL33 140 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 MCTS1Q9ULC4 181 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 ICAM5Q9UMF0 924 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 DAPP1Q9UN19 280 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 MRPS33Q9Y291 106 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 YARS2Q9Y2Z4 477 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 EVPLQ92817 2033 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 NYNRINQ9P2P1 1898 aaKnown RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 TRBV24-1A0A075B6N3 115 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 IGKV2D-30A0A075B6S6 120 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 IGHV2-26A0A0B4J1V2 119 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 A0A0G2JK05 382 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 A0A1B0GTI1 187 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 A0A1B0GW64 132 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 TRDV1A0A1B0GX56 115 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 A0A1W2PR80 420 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 FEZF1A0PJY2 475 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 MBLAC1A4D2B0 266 aaPredicted RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 PSMB11A5LHX3 300 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 ASPDHA6ND91 283 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 GLOD5A6NK44 160 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 FAM220BPB1ANY3 271 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 ZNF878C9JN71 531 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 C9JQL5 133 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 E7EQ34 232 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 C15orf65H3BRN8 121 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 J3KR12 359 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 AGPAT2O15120 278 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 XRCC2O43543 280 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 TNFSF14O43557 240 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 SPRY1O43609 319 aaPredicted RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 SYNGR3O43761 229 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 YPEL1O60688 119 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 ENTPD6O75354 484 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 REM1O75628 298 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 GRAP2O75791 330 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 ACTL6BO94805 426 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 VENTXO95231 258 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 TRUB2O95900 331 aaKnown RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 SOD1P00441 154 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 GBAP04062 536 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 WNT1P04628 370 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 SERPINE2P07093 398 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 WNT2P09544 360 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 HOXB7P09629 217 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 RAB40ALP0C0E4 278 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 IGLC1P0CG04 106 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 FAM157CP0CG43 387 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PSG2P11465 335 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 GNB3P16520 340 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CEBPBP17676 345 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CD58P19256 250 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 ELK1P19419 428 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 TNFRSF1BP20333 461 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CST5P28325 142 aaPredicted RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 GABRA5P31644 462 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CFHR2P36980 270 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CTRLP40313 264 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CDKN2AP42771 156 aaKnown RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 CDKN2BP42772 138 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 RGRP47804 291 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 AMTP48728 403 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CSRP3P50461 194 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PAX9P55771 341 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 C1QTNF8P60827 252 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 RPL7AP62424 266 aaKnown RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 SELENOWP63302 87 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 BCL2L1Q07817 233 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 HSD52Q0P140 79 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PDE7AQ13946 482 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 KIR2DS3Q14952 304 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 SPHARQ15513 63 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 MMDQ15546 238 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 EFNB3Q15768 340 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 SYPL1Q16563 259 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms