RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ZNF529Q6P280 563 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 BTNL3Q6UXE8 466 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 Q6ZPA2 131 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 CCDC54Q8NEL0 328 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 OR5D14Q8NGL3 314 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 SPSB1Q96BD6 273 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 C10orf35Q96D05 121 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 DERL3Q96Q80 235 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 GPER1Q99527 375 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 MRI1Q9BV20 369 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 BEX1Q9HBH7 125 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 TNFRSF19Q9NS68 423 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 KAAG1Q9UBP8 84 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 ING4Q9UNL4 249 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 POLDIP2Q9Y2S7 368 aa11.39□□□□□ -0.59
CLN3-235ENST00000568497 PPIAL4CA0A0B4J2A2 164 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 A0A1W2PQ09 198 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 NDUFA2O43678 99 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 ENSAO43768 121 aaKnown RBP11.38□□□□□ -0.59
CLN3-235ENST00000568497 PSPNO60542 156 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 HAND1O96004 215 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 PPIAL4GP0DN37 164 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 MMP9P14780 707 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 IGFBP3P17936 291 aaPredicted RBP11.38□□□□□ -0.59
CLN3-235ENST00000568497 ZNF273Q14593 569 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 PIGYQ3MUY2 71 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 Q499Y3 187 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 ACSM3Q53FZ2 586 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 FAM58AQ8N1B3 248 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 Q8N7P7 452 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 OR4S1Q8NGB4 309 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 FAM110DQ8TAY7 271 aaPredicted RBP11.38□□□□□ -0.59
CLN3-235ENST00000568497 LHX4Q969G2 390 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 MUL1Q969V5 352 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 C12orf43Q96C57 262 aaKnown RBP11.38□□□□□ -0.59
CLN3-235ENST00000568497 SDSLQ96GA7 329 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 MYCBPQ99417 103 aaPredicted RBP11.38□□□□□ -0.59
CLN3-235ENST00000568497 CITED1Q99966 193 aa11.38□□□□□ -0.59
CLN3-235ENST00000568497 MS4A7Q9GZW8 240 aaPredicted RBP11.38□□□□□ -0.59
CLN3-235ENST00000568497 DENRO43583 198 aaKnown RBP11.37□□□□□ -0.59
CLN3-235ENST00000568497 TOX4O94842 621 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 HTR3BO95264 441 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 TSPAN15O95858 294 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 CRYBA1P05813 215 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 GABRR1P24046 479 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 BDKRB2P30411 391 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 TGFBR2P37173 567 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 RAG2P55895 527 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 SSX1Q16384 188 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 YIF1BQ5BJH7 314 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 RBM48Q5RL73 367 aaKnown RBP11.37□□□□□ -0.59
CLN3-235ENST00000568497 OLFML2AQ68BL7 652 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 C16orf87Q6PH81 154 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 BAIAP2L2Q6UXY1 529 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 TMEM91Q6ZNR0 172 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 PRSS48Q7RTY5 328 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 VMO1Q7Z5L0 202 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 CEACAM19Q7Z692 300 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 RTN4RL2Q86UN3 420 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 MKXQ8IYA7 352 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 OR4F5Q8NH21 305 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 WDFY2Q96P53 400 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 SIRPDQ9H106 197 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 CNTD2Q9H8S5 307 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 HMG20AQ9NP66 347 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 RASL12Q9NYN1 266 aa11.37□□□□□ -0.59
CLN3-235ENST00000568497 TRAV39A0A0B4J263 110 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 SMIM30A4D0T7 59 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 ZNF737O75373 536 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 KDM4BO94953 1096 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 TK1P04183 234 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 CD2P06729 351 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 SERPINA2P20848 420 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 NPY4RP50391 375 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 EDDM3BP56851 147 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 TAS2R43P59537 309 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 PPP3R1P63098 170 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 EMX1Q04741 257 aaPredicted RBP11.36□□□□□ -0.59
CLN3-235ENST00000568497 VAX1Q5SQQ9 334 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 RNLSQ5VYX0 342 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 TMEM200BQ69YZ2 307 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 Q6P435 159 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 ZNF782Q6ZMW2 699 aaPredicted RBP11.36□□□□□ -0.59
CLN3-235ENST00000568497 TCF23Q7RTU1 214 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 JAGN1Q8N5M9 183 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 LY6G5BQ8NDX9 201 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 OR4D6Q8NGJ1 314 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 C17orf50Q8WW18 174 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 UFD1Q92890 307 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 UPRTQ96BW1 309 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 MED30Q96HR3 178 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 PPA2Q9H2U2 334 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 ACOT13Q9NPJ3 140 aa11.36□□□□□ -0.59
CLN3-235ENST00000568497 CENPVL3A0A0U1RRI6 287 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 FAM172BPA6NC97 362 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 OR2H2O95918 312 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 CYB5AP00167 134 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 COX7A1P24310 79 aa11.35□□□□□ -0.59
CLN3-235ENST00000568497 ZNF93P35789 620 aaPredicted RBP11.35□□□□□ -0.59
CLN3-235ENST00000568497 OR3A1P47881 315 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms