RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, human

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-218	ENST00000566029	USP17L23	D6RBM5	183 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	TMPRSS11D	O60235	418 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	CSNK1G2	P78368	415 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	BTNL3	Q6UXE8	466 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	C1orf210	Q8IVY1	113 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ZNF417	Q8TAU3	575 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	MRGPRD	Q8TDS7	321 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	MMAB	Q96EY8	250 aa	Predicted RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	ALKBH3	Q96Q83	286 aa	Predicted RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	YPEL2	Q96QA6	119 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	FAM173A	Q9BQD7	235 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	CFHR5	Q9BXR6	569 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ZMAT3	Q9HA38	289 aa	Known RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	GPR35	Q9HC97	309 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	FKBP11	Q9NYL4	201 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	PLA2G3	Q9NZ20	509 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	SERPINE3	A8MV23	424 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029		M0QZQ0	153 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	HPRT1	P00492	218 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	IFNA1	P01562	189 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	MBP	P02686	304 aa	Predicted RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	HMGN2	P05204	90 aa	Known RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	CD46	P15529	392 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	MFAP5	Q13361	173 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	PMS2P11	Q13670	270 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ZNF658B	Q4V348	819 aa	Predicted RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	NCR3LG1	Q68D85	454 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	FAM129C	Q86XR2	697 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	CDC20B	Q86Y33	519 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	LYPD6	Q86Y78	171 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ZNF679	Q8IYX0	411 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	GBGT1	Q8N5D6	347 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	CISD2	Q8N5K1	135 aa	Known RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	ST6GALNAC3	Q8NDV1	305 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ZNF740	Q8NDX6	193 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	OR2T33	Q8NG76	320 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	OR4X1	Q8NH49	305 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	MRGPRF	Q96AM1	343 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	NKX3-1	Q99801	234 aa	Predicted RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	RBM24	Q9BX46	236 aa	Known RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	ULBP3	Q9BZM4	244 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	KLRF1	Q9NZS2	232 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	RNF181	Q9P0P0	153 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	FBXL17	Q9UF56	701 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	SERGEF	Q9UGK8	458 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	SCN5A	Q14524	2016 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	GEMIN2	O14893	280 aa	Known RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	OR7C2	O60412	319 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	NGF	P01138	241 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	PFN1	P07737	140 aa	Known RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	BMP5	P22003	454 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	CST5	P28325	142 aa	Predicted RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	CKS1B	P61024	79 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	HLA-DRB3	P79483	266 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	DUSP28	Q4G0W2	176 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	TEX43	Q6ZNM6	134 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	TMPRSS12	Q86WS5	348 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	OR10AC1	Q8NH08	325 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	KCNK15	Q9H427	330 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	TMEM160	Q9NX00	188 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	WSB2	Q9NYS7	404 aa	Predicted RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	ZNF780B	Q9Y6R6	833 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	NRXN2	Q9P2S2	1712 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	PIKFYVE	Q9Y2I7	2098 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	TRAV39	A0A0B4J263	110 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	UMAD1	C9J7I0	102 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	DUX1	O43812	170 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ADIRF	Q15847	76 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ZIC1	Q15915	447 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	TMEM241	Q24JQ0	296 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	GCSAML	Q5JQS6	135 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	PRR31	Q5SQ13	230 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	TCF24	Q7RTU0	167 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	OR56A1	Q8NGH5	318 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	NMES1	Q9C002	83 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	TXNIP	Q9H3M7	391 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	WASHC3	Q9Y3C0	194 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	KCNE3	Q9Y6H6	103 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	MBLAC1	A4D2B0	266 aa	Predicted RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	HSD17B6	O14756	317 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	HIST1H1C	P16403	213 aa	Known RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	FUT1	P19526	365 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ERVS71-1	P61550	626 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ZNF117	Q03924	483 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ZNF260	Q3ZCT1	412 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	LILRA6	Q6PI73	481 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	WDFY1	Q8IWB7	410 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	GJC3	Q8NFK1	279 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	OR5K2	Q8NHB8	316 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	GINS3	Q9BRX5	216 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	MARCH2	Q9P0N8	246 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	SEMA4F	O95754	770 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	MPIG6B	O95866	241 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	APOBEC3A	P31941	199 aa	Predicted RBP	2.58	□□□□□ -2
CHD9-218	ENST00000566029	CACNG7	P62955	275 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	ST3GAL3	Q11203	375 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	MORN1	Q5T089	497 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	SFTA2	Q6UW10	78 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	TMEM205	Q6UW68	189 aa		2.58	□□□□□ -2
CHD9-218	ENST00000566029	NUFIP2	Q7Z417	695 aa	Known RBP	2.58	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms