RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PRR23D2P0DMB1 279 aaPredicted RBP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 GP9P14770 177 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 SPNP16150 400 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 ALOX5APP20292 161 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 CD34P28906 385 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 ERP29P30040 261 aaKnown RBP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 GPR12P47775 334 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 VEGFCP49767 419 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 HCCSP53701 268 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 PPP1R8Q12972 351 aaKnown RBP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FOXE3Q13461 319 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 SRSF7Q16629 238 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 ZNF829Q3KNS6 432 aaPredicted RBP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 TMEM42Q69YG0 159 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 C8orf82Q6P1X6 216 aaPredicted RBP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 HACD2Q6Y1H2 254 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 SLC25A26Q70HW3 274 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 ENTHD1Q8IYW4 607 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 IQCF1Q8N6M8 205 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 TEX47Q8TBZ9 253 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 C4orf3Q8WVX3 66 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 TM2D3Q9BRN9 247 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 TTTY10Q9BZA0 68 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 CCDC134Q9H6E4 229 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 GORASP2Q9H8Y8 452 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 ISYNA1Q9NPH2 558 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FGFR1OP2Q9NVK5 253 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 ING3Q9NXR8 418 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 TAS2R3Q9NYW6 316 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 IL36RNQ9UBH0 155 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 ABCD2Q9UBJ2 740 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 NUFIP1Q9UHK0 495 aaKnown RBP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 AMMECR1Q9Y4X0 333 aaPredicted RBP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 U3KQV3 271 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 CSMD3Q7Z407 3707 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 LOC110117498-PIK3R3F6TDL0 507 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 H3BN98 237 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 H3BSH0 61 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 OVOL1O14753 267 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 RRP9O43818 475 aaKnown RBP5.71□□□□□ -1.5
VPS4A-203ENST00000564399 IGLV3-1P01715 115 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 IGHV3-7P01780 117 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 TTRP02766 147 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 CALCBP10092 127 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 MYF6P23409 242 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 PTGFRP43088 359 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 OR3A1P47881 315 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 GLIPR1P48060 266 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 RIDAP52758 137 aaKnown RBP5.71□□□□□ -1.5
VPS4A-203ENST00000564399 HMGA2P52926 109 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF91Q05481 1191 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 GABPB1Q06547 395 aaPredicted RBP5.71□□□□□ -1.5
VPS4A-203ENST00000564399 AESQ08117 197 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 MFGE8Q08431 387 aaPredicted RBP5.71□□□□□ -1.5
VPS4A-203ENST00000564399 FHL3Q13643 280 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 DEGS2Q6QHC5 323 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 LHFPL2Q6ZUX7 228 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 CPOQ8IVL8 374 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 Q8IYB0 196 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 FAM58AQ8N1B3 248 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 OR1N2Q8NGR9 330 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 OR9G1Q8NH87 305 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 CORO2AQ92828 525 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 NSMCE2Q96MF7 247 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 OR5B12Q96R08 314 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 SPAG4Q9NPE6 437 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 RBFOX1Q9NWB1 397 aaKnown RBP5.71□□□□□ -1.5
VPS4A-203ENST00000564399 MAGEL2Q9UJ55 1249 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 IKZF2Q9UKS7 526 aa5.71□□□□□ -1.5
VPS4A-203ENST00000564399 IGKV1-27A0A075B6S5 117 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 A0A1W2PPI3 338 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 ODAMA1E959 279 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 HMGB1P1B2RPK0 211 aaPredicted RBP5.7□□□□□ -1.5
VPS4A-203ENST00000564399 SH2D1BO14796 132 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 PRODHO43272 600 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF254O75437 659 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 E2F6O75461 281 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 CYB5AP00167 134 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 IFNA6P05013 189 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 MRPL3P09001 348 aaKnown RBP5.7□□□□□ -1.5
VPS4A-203ENST00000564399 PRKACAP17612 351 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 VDAC1P21796 283 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 RAB7AP51149 207 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 FUT6P51993 359 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 CDC42P60953 191 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 SCN1BQ07699 218 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF616Q08AN1 781 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 BNIP1Q12981 228 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 MADCAM1Q13477 382 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 DIAPH2-AS1Q14236 149 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 UTF1Q5T230 341 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 BCL2L15Q5TBC7 163 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 TMEM65Q6PI78 240 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 MOB3BQ86TA1 216 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 TGIF2LXQ8IUE1 241 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF679Q8IYX0 411 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 OR8H3Q8N146 312 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 RNF152Q8N8N0 203 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 OR6Q1Q8NGQ2 317 aa5.7□□□□□ -1.5
VPS4A-203ENST00000564399 OR14K1Q8NGZ2 314 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms