RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 MAGT1Q9H0U3 335 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 PLA2G3Q9NZ20 509 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 CRYM-AS1A6NIL9 109 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 LRRC3CA6NJW4 275 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 TNFSF12O43508 249 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 NR2C1P13056 603 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 CBR1P16152 277 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 KCNJ3P48549 501 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 IL15RAQ13261 267 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 SMCO1Q147U7 214 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 PPP1R32Q7Z5V6 425 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 OSR2Q8N2R0 312 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 ZNF251Q9BRH9 671 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 OR2H1Q9GZK4 316 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 WFDC1Q9HC57 220 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 MMP26Q9NRE1 261 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 SLC2A9Q9NRM0 540 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 GHRLQ9UBU3 117 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 BDP1A6H8Y1 2624 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 A0A1B0GWJ7 208 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 CLN5O75503 358 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 ONECUT2O95948 504 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 CHATP28329 748 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 HIST1H3AP68431 136 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 ZNF239Q16600 458 aaKnown RBP11.66□□□□□ -0.54
CLK3-215ENST00000564353 ACER2Q5QJU3 275 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 HIST2H3PS2Q5TEC6 136 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 HIST2H3AQ71DI3 136 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 ZNF611Q8N823 705 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 UBALD1Q8TB05 177 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 ZNF488Q96MN9 340 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 NRIP2Q9BQI9 281 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 SH2D2AQ9NP31 389 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 BIN3Q9NQY0 253 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 NECAP2Q9NVZ3 263 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 MEMO1Q9Y316 297 aa11.66□□□□□ -0.54
CLK3-215ENST00000564353 PQLC2LA1A4F0 135 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 RNASEK-C17orf49H0YIS7 233 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 DEDDO75618 318 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 PET100P0DJ07 73 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 AADACP22760 399 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 ITGA3P26006 1051 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 GPM6AP51674 278 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 CLINT1Q14677 625 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 LINC00696Q6ZRV3 163 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 M1APQ8TC57 530 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 NEK7Q8TDX7 302 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 TCFL5Q9UL49 500 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 TRAV39A0A0B4J263 110 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 ZNF503-AS2A6NEH8 195 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 PRSS47A8MTI9 375 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 S100A9P06702 114 aaKnown RBP11.65□□□□□ -0.54
CLK3-215ENST00000564353 ALDH3B1P43353 468 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 PDZK1IP1Q13113 114 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 TSC22D1Q15714 1073 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 SFT2D1Q8WV19 159 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 TP53RKQ96S44 253 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 GPR35Q9HC97 309 aa11.65□□□□□ -0.54
CLK3-215ENST00000564353 C5orf49A4QMS7 147 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 CTSDP07339 412 aaPredicted RBP11.64□□□□□ -0.55
CLK3-215ENST00000564353 ZNF133P52736 654 aaPredicted RBP11.64□□□□□ -0.55
CLK3-215ENST00000564353 CNN3Q15417 329 aaKnown RBP11.64□□□□□ -0.55
CLK3-215ENST00000564353 FAM189A2Q15884 450 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 DHRS11Q6UWP2 260 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 NGFP01138 241 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 PRH1P02810 166 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 BCL3P20749 454 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 CEBPGP53567 150 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 NAAAQ02083 359 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 ZFP36L1Q07352 338 aaKnown RBP11.64□□□□□ -0.55
CLK3-215ENST00000564353 UQCC3Q6UW78 93 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 TUSC5Q8IXB3 177 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 SPAG16Q8N0X2 631 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 OR56B2PQ8NGI1 322 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 OR2V1Q8NHB1 315 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 RHBDD1Q8TEB9 315 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 CT55Q8WUE5 264 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 ISOC2Q96AB3 205 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 THOC3Q96J01 351 aaKnown RBP11.64□□□□□ -0.55
CLK3-215ENST00000564353 SIGLEC12Q96PQ1 595 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 NAA60Q9H7X0 242 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 SLC7A10Q9NS82 523 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 ZDHHC8Q9ULC8 765 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 KCNIP3Q9Y2W7 256 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 TIMM10BQ9Y5J6 103 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 GPR37O15354 613 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 GPX4P36969 197 aaPredicted RBP11.64□□□□□ -0.55
CLK3-215ENST00000564353 TMEM187Q14656 261 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 MIDNQ504T8 468 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 FBXW12Q6X9E4 464 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 FOXL2NBQ6ZUU3 175 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 GLYATL2Q8WU03 294 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 SPSB1Q96BD6 273 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 LRFN1Q9P244 771 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 RCC2Q9P258 522 aaKnown RBP11.64□□□□□ -0.55
CLK3-215ENST00000564353 SLC7A11Q9UPY5 501 aa11.64□□□□□ -0.55
CLK3-215ENST00000564353 NTN3O00634 580 aaPredicted RBP11.63□□□□□ -0.55
CLK3-215ENST00000564353 FKBP2P26885 142 aaKnown RBP11.63□□□□□ -0.55
CLK3-215ENST00000564353 SRD5A2P31213 254 aa11.63□□□□□ -0.55
CLK3-215ENST00000564353 CYB561P49447 251 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms