RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ATG4DQ86TL0 474 aaPredicted RBP11.62□□□□□ -0.55
CLK3-206ENST00000562078 IFI44Q8TCB0 444 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 OR2J1Q9GZK6 312 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 COPS7AQ9UBW8 275 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 A8MXE2 369 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 CD55P08174 381 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 MMP9P14780 707 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 ALDH3B1P43353 468 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 RPS4XP62701 263 aaKnown RBP11.61□□□□□ -0.55
CLK3-206ENST00000562078 WDR25Q64LD2 544 aaPredicted RBP11.61□□□□□ -0.55
CLK3-206ENST00000562078 SSX7Q7RTT5 188 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 KMT5CQ86Y97 462 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 DAZLQ92904 295 aaKnown RBP11.61□□□□□ -0.55
CLK3-206ENST00000562078 LOXL4Q96JB6 756 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 C5orf34Q96MH7 638 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 ALKBH3Q96Q83 286 aaPredicted RBP11.61□□□□□ -0.55
CLK3-206ENST00000562078 WWTR1Q9GZV5 400 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 FKBP11Q9NYL4 201 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 B9D1Q9UPM9 204 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 TRBV24-1A0A075B6N3 115 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 A0A1W2PQM1 296 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 LNP1A1A4G5 178 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 SDCBPO00560 298 aaPredicted RBP11.61□□□□□ -0.55
CLK3-206ENST00000562078 GALR2O43603 387 aaPredicted RBP11.61□□□□□ -0.55
CLK3-206ENST00000562078 JMJD7P0C870 316 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 PNMTP11086 282 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 FPR2P25090 351 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 DCAF7P61962 342 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 ZNF117Q03924 483 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 PLCXD2Q0VAA5 305 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 RNF151Q2KHN1 245 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 KIF26BQ2KJY2 2108 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 COA6Q5JTJ3 125 aaKnown RBP11.61□□□□□ -0.55
CLK3-206ENST00000562078 C1QL3Q5VWW1 255 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 P4HA3Q7Z4N8 544 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 SGPP2Q8IWX5 399 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 ZNF100Q8IYN0 542 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 OR52N4Q8NGI2 321 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 OR2AJ1Q8NGZ0 328 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 NICN1Q9BSH3 213 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 ZNF700Q9H0M5 742 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 CNTD2Q9H8S5 307 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 GLRX2Q9NS18 164 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 ZFP30Q9Y2G7 519 aa11.61□□□□□ -0.55
CLK3-206ENST00000562078 IGHV3-20A0A0C4DH32 117 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 A6NJY4 79 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 HCRTR2O43614 444 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 HOXC12P31275 282 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 GRK6P43250 576 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 DUSP3P51452 185 aaPredicted RBP11.6□□□□□ -0.55
CLK3-206ENST00000562078 COX15Q7KZN9 410 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 NKAIN3Q8N8D7 197 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 OR13C3Q8NGS6 347 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 OR13G1Q8NGZ3 307 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 FNDC9Q8TBE3 224 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 HAS2Q92819 552 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 TMEM18Q96B42 140 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 CCDC74BQ96LY2 380 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 PARD6GQ9BYG4 376 aaPredicted RBP11.6□□□□□ -0.55
CLK3-206ENST00000562078 TCFL5Q9UL49 500 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 CEACAM18A8MTB9 384 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 CCL25O15444 150 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 CEACAM1P13688 526 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 DNASE1L1P49184 302 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 UCP3P55916 312 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 GNB2P62879 340 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 EGR4Q05215 589 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 ZNF74Q16587 644 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 PRSS8Q16651 343 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 RTL6Q6ICC9 239 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 ZNF66Q6ZN08 573 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 MARCH3Q86UD3 253 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 MRPL24Q96A35 216 aaKnown RBP11.6□□□□□ -0.55
CLK3-206ENST00000562078 PPIAL4AQ9Y536 164 aa11.6□□□□□ -0.55
CLK3-206ENST00000562078 A0A1B0GU03 582 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 FAM221AA4D161 298 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 NUDT14O95848 222 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 S100A7P31151 101 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 PTGER4P35408 488 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 RAB7AP51149 207 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 VAMP2P63027 116 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 TDRG1Q3Y452 100 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 LEMD1Q68G75 181 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 STT3BQ8TCJ2 826 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 OIT3Q8WWZ8 545 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 FAM122AQ96E09 287 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 KTI12Q96EK9 354 aaPredicted RBP11.59□□□□□ -0.55
CLK3-206ENST00000562078 MMP25Q9NPA2 562 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 KIAA1456Q9P272 454 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 NAGKQ9UJ70 344 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 TUBD1Q9UJT1 453 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 RHBDD3Q9Y3P4 386 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 ETV2O00321 342 aaPredicted RBP11.59□□□□□ -0.55
CLK3-206ENST00000562078 TSPAN2O60636 221 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 TIAF1O95411 115 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 HSPB1P04792 205 aaKnown RBP11.59□□□□□ -0.55
CLK3-206ENST00000562078 TUBG1P23258 451 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 CARD18P57730 90 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 SLC17A1Q14916 467 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 SLC38A9Q8NBW4 561 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms