RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 VSIG8P0DPA2 414 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 ZNF44P15621 663 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 MGMTP16455 207 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 TGFBR1P36897 503 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 RPL5P46777 297 aaKnown RBP17.96■□□□□ 0.47
SNX1-206ENST00000559389 P2RY14Q15391 338 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 HES5Q5TA89 166 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 C17orf107Q6ZR85 190 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 LINC00596Q86U02 117 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 ANKRD13BQ86YJ7 626 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 CHST4Q8NCG5 386 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 KCNK15Q9H427 330 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 MMP26Q9NRE1 261 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 SCOCQ9UIL1 159 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 KCNS2Q9ULS6 477 aa17.96■□□□□ 0.47
SNX1-206ENST00000559389 LOC105371242A0A075B767 164 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 NOTOA8MTQ0 251 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 AIPO00170 330 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 SIRPB1O00241 398 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 PSPNO60542 156 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 CRTAPO75718 401 aaPredicted RBP17.95■□□□□ 0.46
SNX1-206ENST00000559389 NDUFB7P17568 137 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 LMO1P25800 156 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 CLDN12P56749 244 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 LSM3P62310 102 aaKnown RBP17.95■□□□□ 0.46
SNX1-206ENST00000559389 QRFPP83859 136 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 MPV17LQ2QL34 196 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 CD276Q5ZPR3 534 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 BTN2A1Q7KYR7 527 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 OR8H2Q8N162 312 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 SNX22Q96L94 193 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 NAA50Q9GZZ1 169 aaKnown RBP17.95■□□□□ 0.46
SNX1-206ENST00000559389 BANF2Q9H503 90 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 YAE1D1Q9NRH1 226 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 STEAP1Q9UHE8 339 aa17.95■□□□□ 0.46
SNX1-206ENST00000559389 RPUSD1Q9UJJ7 312 aaKnown RBP17.95■□□□□ 0.46
SNX1-206ENST00000559389 A0A0G2JMP0 313 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 A0A0X1KG70 313 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 TMEM14DPA8MWL7 114 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 SLC33A1O00400 549 aaPredicted RBP17.94■□□□□ 0.46
SNX1-206ENST00000559389 ENSAO43768 121 aaKnown RBP17.94■□□□□ 0.46
SNX1-206ENST00000559389 ECDO95905 644 aaPredicted RBP17.94■□□□□ 0.46
SNX1-206ENST00000559389 CLEC2LP0C7M8 214 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 GATA3P23771 443 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 RANBP1P43487 201 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 OR3A1P47881 315 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 NCS1P62166 190 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 UNC119Q13432 240 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 GPR107Q5VW38 600 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 OR10K2Q6IF99 312 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 OR2W3Q7Z3T1 314 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 OR4M2Q8NGB6 313 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 C8orf46Q8TAG6 207 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 RAB40AQ8WXH6 277 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 FAM46BQ96A09 425 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 Q96M66 194 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 DCTN5Q9BTE1 182 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 IFT22Q9H7X7 185 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 ZNF581Q9P0T4 197 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 INSIG2Q9Y5U4 225 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 ABCA1O95477 2261 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 MALRD1Q5VYJ5 2156 aa17.94■□□□□ 0.46
SNX1-206ENST00000559389 A8MV72 311 aaPredicted RBP17.93■□□□□ 0.46
SNX1-206ENST00000559389 GEMIN2O14893 280 aaKnown RBP17.93■□□□□ 0.46
SNX1-206ENST00000559389 DEGS1O15121 323 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 MPIG6BO95866 241 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 ARSBP15848 533 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 GABRR1P24046 479 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 MXD1Q05195 221 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 PDCD1Q15116 288 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 DCAF12L2Q5VW00 463 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 OR4S1Q8NGB4 309 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 OR51D1Q8NGF3 324 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 KCNG3Q8TAE7 436 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 H1FXQ92522 213 aaKnown RBP17.93■□□□□ 0.46
SNX1-206ENST00000559389 FAM3DQ96BQ1 224 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 NUDT16L1Q9BRJ7 211 aaKnown RBP17.93■□□□□ 0.46
SNX1-206ENST00000559389 TMEM59Q9BXS4 323 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 SELENOIQ9C0D9 397 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 SHARPINQ9H0F6 387 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 FBLN5Q9UBX5 448 aa17.93■□□□□ 0.46
SNX1-206ENST00000559389 MAP1AP78559 2803 aaPredicted RBP17.93■□□□□ 0.46
SNX1-206ENST00000559389 TRBV23-1A0A0A0MS06 115 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 TRAV24A0A0B4J272 114 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A10PA6NDY2 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A18PA6NE21 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A16PA6NEW6 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A20PA6NIJ5 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A8PA6NJQ4 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A7PA6NKC0 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A22PA8MWA6 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A12PA8MX19 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A5PA8MXJ8 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A23PA8MXZ1 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 LDLRAD4O15165 306 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 OR7C1O76099 320 aaPredicted RBP17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A15PP0C7V4 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A13PP0C7W8 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A14PP0C7W9 464 aa17.92■□□□□ 0.46
SNX1-206ENST00000559389 FAM90A24PP0C7X0 464 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms