RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PSG4Q00888 419 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 DEFA6Q01524 100 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 HMGN3Q15651 99 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 LGI3Q8N145 548 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 OR14K1Q8NGZ2 314 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 ANXA10Q9UJ72 324 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 AMDHD2Q9Y303 409 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 TAAR5O14804 337 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 TOX3O15405 576 aaPredicted RBP12.95□□□□□ -0.34
CUX1-215ENST00000556210 IAPPP10997 89 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 S100PP25815 95 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 GSK3AP49840 483 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 TMEM33P57088 247 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 ZNF581Q9P0T4 197 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 MIOXQ9UGB7 285 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 FREM1Q5H8C1 2179 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 IGKV1-9A0A0C4DH69 117 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 IFNA5P01569 189 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 ISG15P05161 165 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 CD37P11049 281 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 ACKR3P25106 362 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 NKX2-1P43699 371 aaPredicted RBP12.95□□□□□ -0.34
CUX1-215ENST00000556210 MRPL49Q13405 166 aaKnown RBP12.95□□□□□ -0.34
CUX1-215ENST00000556210 HFEQ30201 348 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 ADPRHL1Q8NDY3 354 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 HAS2Q92819 552 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 TGIF2Q9GZN2 237 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 A0A087WZY1 265 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 A0A1W2PPH5 198 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 H7C1Q1 480 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 LYZL6O75951 148 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 IFI6P09912 130 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 CD46P15529 392 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 RAB5CP51148 216 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 B2MP61769 119 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 HIKESHIQ53FT3 197 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 OR8G2PQ6IF36 304 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 RAB18Q9NP72 206 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 SLC7A10Q9NS82 523 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 PILRBQ9UKJ0 227 aa12.95□□□□□ -0.34
CUX1-215ENST00000556210 FAM24AA6NFZ4 105 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 NPBWR2P48146 333 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 UBE2KP61086 200 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 POLR2GP62487 172 aaKnown RBP eCLIP12.94□□□□□ -0.34
CUX1-215ENST00000556210 FDX2Q6P4F2 183 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 OR6S1Q8NH40 331 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 RFESDQ8TAC1 157 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 SDSLQ96GA7 329 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 ZNF816-ZNF321PA0A0X1KG74 233 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 K7ESF4 209 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 COX6A1P12074 109 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 MRPS34P82930 218 aaKnown RBP12.94□□□□□ -0.34
CUX1-215ENST00000556210 SLC10A1Q14973 349 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 RAB35Q15286 201 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 DPPA2Q7Z7J5 298 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 UBALD2Q8IYN6 164 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 OR2G3Q8NGZ4 309 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 CPNE4Q96A23 557 aaPredicted RBP12.94□□□□□ -0.34
CUX1-215ENST00000556210 PRRX2Q99811 253 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 OCSTAMPQ9BR26 566 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 OR6C6A6NF89 314 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 CD300LBA8K4G0 201 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 OR2C1O95371 312 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 IL2RGP31785 369 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 GABRA2P47869 451 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 DVL1P1P54792 670 aaPredicted RBP12.94□□□□□ -0.34
CUX1-215ENST00000556210 GUK1Q16774 197 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 AWAT1Q58HT5 328 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 FAM209BQ5JX69 171 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 FAHD2BQ6P2I3 314 aaPredicted RBP12.94□□□□□ -0.34
CUX1-215ENST00000556210 ZNF441Q8N8Z8 693 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 CCDC54Q8NEL0 328 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 OR8U1Q8NH10 309 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 FAHD2AQ96GK7 314 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 MMP24Q9Y5R2 645 aa12.94□□□□□ -0.34
CUX1-215ENST00000556210 HMGB3O15347 200 aaKnown RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 FKBP2P26885 142 aaKnown RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 SRD5A2P31213 254 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 SUCLG1P53597 346 aaKnown RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 NCMAPQ5T1S8 102 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 RPUSD3Q6P087 351 aaKnown RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 NMES1Q9C002 83 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 CHST5Q9GZS9 411 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 ZNF106Q9H2Y7 1883 aaKnown RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 DEGS1O15121 323 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 CST4P01036 141 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 FUT3P21217 361 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 MECP2P51608 486 aaKnown RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 LSM6P62312 80 aaKnown RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 NKX6-1P78426 367 aaPredicted RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 PRDX4Q13162 271 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 IZUMO4Q1ZYL8 232 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 CLEC12BQ2HXU8 276 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 RNF212Q495C1 297 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 RBMS3Q6XE24 437 aaKnown RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 SLC30A7Q8NEW0 376 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 SAT2Q96F10 170 aaPredicted RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 RCL1Q9Y2P8 373 aaKnown RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 E9PLN8 166 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 ZIC3O60481 467 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms