RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 NUFIP1Q9UHK0 495 aaKnown RBP10.05□□□□□ -0.8
VPS29-211ENST00000553128 LAMP5Q9UJQ1 280 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 V9GYS6 101 aa10.05□□□□□ -0.8
VPS29-211ENST00000553128 A0A1B0GTI1 187 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 OOSP1A8MZH6 123 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 AP4M1O00189 453 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 SIRPB1O00241 398 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 MGST3O14880 152 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 CCNB2O95067 398 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 IGKV1D-33P01593 117 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 IGKV1-33P01594 117 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 GP9P14770 177 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 ERP29P30040 261 aaKnown RBP10.04□□□□□ -0.8
VPS29-211ENST00000553128 NPBWR2P48146 333 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 INSL3P51460 131 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 CFHR3Q02985 330 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 FOXE3Q13461 319 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 HACD2Q6Y1H2 254 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 LHFPL2Q6ZUX7 228 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 SLC25A26Q70HW3 274 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 CORO2AQ92828 525 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 LEAP2Q969E1 77 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 RPEQ96AT9 228 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 CREB3L1Q96BA8 519 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 GAL3ST2Q9H3Q3 398 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 EFCAB1Q9HAE3 211 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 GNB4Q9HAV0 340 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 SIRT4Q9Y6E7 314 aaPredicted RBP10.04□□□□□ -0.8
VPS29-211ENST00000553128 KIAA2026Q5HYC2 2103 aa10.04□□□□□ -0.8
VPS29-211ENST00000553128 A0A087X0M5 115 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 TRGV10A0A0A0MS01 117 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 A0A1B0GX30 115 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 PRR23D1E9PI22 279 aaPredicted RBP10.03□□□□□ -0.8
VPS29-211ENST00000553128 H3BSH0 61 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 LDLRAD4O15165 306 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 MAGEB4O15481 346 aaPredicted RBP10.03□□□□□ -0.8
VPS29-211ENST00000553128 SRSF10O75494 262 aaKnown RBP10.03□□□□□ -0.8
VPS29-211ENST00000553128 KRT36O76013 467 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 PRR23D2P0DMB1 279 aaPredicted RBP10.03□□□□□ -0.8
VPS29-211ENST00000553128 PRRX1P54821 245 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 AESQ08117 197 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 KPNB1Q14974 876 aaKnown RBP10.03□□□□□ -0.8
VPS29-211ENST00000553128 UBE2V2Q15819 145 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 SRSF7Q16629 238 aaKnown RBP eCLIP10.03□□□□□ -0.8
VPS29-211ENST00000553128 C17orf58Q2M2W7 97 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 SLX4IPQ5VYV7 408 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 ZNF429Q86V71 674 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 ITFG2Q969R8 447 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 NIPSNAP1Q9BPW8 284 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 ING3Q9NXR8 418 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 COPS3Q9UNS2 423 aa10.03□□□□□ -0.8
VPS29-211ENST00000553128 I3L521 148 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 NDUFAB1O14561 156 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 ENTPD6O75354 484 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 SAP30O75446 220 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 GMNNO75496 209 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 ELANEP08246 267 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 MRPL3P09001 348 aaKnown RBP10.02□□□□□ -0.81
VPS29-211ENST00000553128 IGHV4-30-4P0DP06 118 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 BCL3P20749 454 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 NFYBP25208 207 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 GNB1P62873 340 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 KIAA0141Q14154 515 aaPredicted RBP10.02□□□□□ -0.81
VPS29-211ENST00000553128 PLEKHG7Q6ZR37 379 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 CATSPERDQ86XM0 798 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 OR1N2Q8NGR9 330 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 DCUN1D4Q92564 292 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 OR5B12Q96R08 314 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 HSPB9Q9BQS6 159 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 DGCR6LQ9BY27 220 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 ABCG5Q9H222 651 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 SEBOXQ9HB31 216 aaPredicted RBP10.02□□□□□ -0.81
VPS29-211ENST00000553128 SPAG4Q9NPE6 437 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 TAS2R3Q9NYW6 316 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 GTF2A1LQ9UNN4 478 aa10.02□□□□□ -0.81
VPS29-211ENST00000553128 IGHV3-72A0A0B4J1Y9 119 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 NCBP2LA6PVI3 153 aaKnown RBP10.01□□□□□ -0.81
VPS29-211ENST00000553128 J3QR06 171 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 ARPC2O15144 300 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 IGHG4P01861 327 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 SLC2A5P22732 501 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 MYF6P23409 242 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 PSMB8P28062 276 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 PTGFRP43088 359 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 ZNF146Q15072 292 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 DEGS2Q6QHC5 323 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 Q6ZSR3 168 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 CPOQ8IVL8 374 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 ZNF679Q8IYX0 411 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 Q8N1Y9 231 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 Q8N9W7 124 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 OR4D6Q8NGJ1 314 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 OR9G1Q8NH87 305 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 TEX47Q8TBZ9 253 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 MYOZ3Q8TDC0 251 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 COQ2Q96H96 371 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 KIRREL1Q96J84 757 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 MROQ9BYG7 248 aa10.01□□□□□ -0.81
VPS29-211ENST00000553128 PPIL3Q9H2H8 161 aaKnown RBP10.01□□□□□ -0.81
VPS29-211ENST00000553128 KLK15Q9H2R5 256 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms