RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 A0A1W2PQD3 144 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 A1L4Q6 167 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 ARPC3O15145 178 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 SYT7O43581 403 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 CYTIPO60759 359 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 TRAPPC6AO75865 159 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 NUDT14O95848 222 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 F13BP05160 661 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 NGFRP08138 427 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 OR13C7P0DN81 318 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 CD37P11049 281 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 FAM3AP98173 230 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF117Q03924 483 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 RBPJQ06330 500 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 MOGAT2Q3SYC2 334 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 GXYLT1Q4G148 440 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 TMEM128Q5BJH2 165 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 ALG10BQ5I7T1 473 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 HIST2H2BCQ6DN03 193 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 OR2T2Q6IF00 324 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 LEG1Q6P5S2 330 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 ULK3Q6PHR2 472 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 YRDCQ86U90 279 aaKnown RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 PRSS35Q8N3Z0 413 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 OR13D1Q8NGV5 346 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 TERB2Q8NHR7 220 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 SLC25A43Q8WUT9 341 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 OIT3Q8WWZ8 545 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 RELTQ969Z4 430 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF524Q96C55 264 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 RASD2Q96D21 266 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 NKX3-1Q99801 234 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 KLHDC3Q9BQ90 382 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 ATG101Q9BSB4 218 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 PARP12Q9H0J9 701 aaKnown RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 LAMP5Q9UJQ1 280 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 CACNA1CQ13936 2221 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 NAV2Q8IVL1 2488 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 NCOA6Q14686 2063 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 LRBAP50851 2863 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 TRGV5A0A0B4J1U4 118 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 EREGO14944 169 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 HRH1P35367 487 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 CAMLGP49069 296 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 HNF4GQ14541 408 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 PPA1Q15181 289 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 ELOBQ15370 118 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 CDSNQ15517 529 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 SOHLH1Q5JUK2 328 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 WIPI1Q5MNZ9 446 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 GLYATL3Q5SZD4 288 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 GGNBP1Q5YKI7 109 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 CDC20BQ86Y33 519 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 SUMF2Q8NBJ7 301 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 FAM57AQ8TBR7 257 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 MARCH1Q8TCQ1 289 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 Q8WTZ3 238 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 AQP3Q92482 292 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 C2orf50Q96LR7 162 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 METTL8Q9H825 291 aaKnown RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 UNKLQ9H9P5 680 aaKnown RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 C19orf12Q9NSK7 152 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 RYDENQ9NUL5 291 aaKnown RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 VSX1Q9NZR4 365 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-216ENST00000552909 CKLFQ9UBR5 152 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 MEMO1Q9Y316 297 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 FBXO7Q9Y3I1 522 aa6.67□□□□□ -1.34
LIMA1-216ENST00000552909 PKDREJQ9NTG1 2253 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 KIAA1549Q9HCM3 1950 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 K7EPK0 472 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 PRRG2O14669 202 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 SFT2D2O95562 160 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 CLDN1O95832 211 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 HPNP05981 417 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 CXCL1P09341 107 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 QDPRP09417 244 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 KIR3DL2P43630 455 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 ADORA2A-AS1P86434 159 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 EGR3Q06889 387 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 C17orf67Q0P5P2 114 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 SLC9A3R2Q15599 337 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 WBP2NLQ6ICG8 309 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 SLC22A25Q6T423 547 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF679Q8IYX0 411 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 KDM8Q8N371 416 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 FAM71E2Q8N5Q1 922 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 GVQW1Q8N7I0 195 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 POC1AQ8NBT0 407 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 OR14K1Q8NGZ2 314 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 R3HDM4Q96D70 268 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 OR10C1Q96KK4 312 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 C4orf45Q96LM5 186 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 NELFAQ9H3P2 528 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 ALKBH4Q9NXW9 302 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 FBXL17Q9UF56 701 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF346Q9UL40 294 aaKnown RBP6.66□□□□□ -1.34
LIMA1-216ENST00000552909 HEATR5AQ86XA9 2040 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 PHF3Q92576 2039 aaKnown RBP6.66□□□□□ -1.34
LIMA1-216ENST00000552909 MAST4O15021 2626 aa6.66□□□□□ -1.34
LIMA1-216ENST00000552909 ABCA12Q86UK0 2595 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms