RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 LRRC18Q8N456 261 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 TMEM217Q8N7C4 229 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 OR2G3Q8NGZ4 309 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 FAM131CQ96AQ9 280 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 WFIKKN1Q96NZ8 548 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 TP53RKQ96S44 253 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 SLC25A31Q9H0C2 315 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 CALHM2Q9HA72 323 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 SERINC1Q9NRX5 453 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 KLHL13Q9P2N7 655 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 WNT16Q9UBV4 365 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 MEMO1Q9Y316 297 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 DSPP15924 2871 aaKnown RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 NSG1A0A0A6YYJ2 146 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 FRG2CA6NGY1 282 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 E5RGE8 158 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 PROB1E7EW31 1015 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 PKIAP61925 76 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 EWSR1Q01844 656 aaKnown RBP eCLIP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 SSX2Q16385 188 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 TAF9Q16594 264 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 C21orf62-AS1Q17RA5 79 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 WDR25Q64LD2 544 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 MEX3BQ6ZN04 569 aaKnown RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 MYPOPQ86VE0 399 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 TMEM123Q8N131 208 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 RTN4IP1Q8WWV3 396 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 MSI2Q96DH6 328 aaKnown RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 RBM24Q9BX46 236 aaKnown RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 NSG2Q9Y328 171 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 EML6Q6ZMW3 1958 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 A0A1B0GX78 115 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 ARGFXA6NJG6 315 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 A8MWP6 167 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 SPRY1O43609 319 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 GPR137BO60478 399 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 SCRG1O75711 98 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 POU2F2P09086 479 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 COX5BP10606 129 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 FCGR2AP12318 317 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 CCNOP22674 350 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 RAB1AP62820 205 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 FOXF1Q12946 379 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 USF2Q15853 346 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 RSPO1Q2MKA7 263 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 CXorf66Q5JRM2 361 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 DEGS2Q6QHC5 323 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 SSX7Q7RTT5 188 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 GRINAQ7Z429 371 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 UEVLDQ8IX04 471 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 FBXL14Q8N1E6 418 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 D2HGDHQ8N465 521 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 SLC35G3Q8N808 338 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 BOD1Q96IK1 185 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 NUDT16L1Q9BRJ7 211 aaKnown RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 ZNF700Q9H0M5 742 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 PLEKHA2Q9HB19 425 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 AK3Q9UIJ7 227 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 MRPS17Q9Y2R5 130 aaKnown RBP4.22□□□□□ -1.73
LIMA1-214ENST00000552783 ICE1Q9Y2F5 2266 aa4.22□□□□□ -1.73
LIMA1-214ENST00000552783 IGHV3-15A0A0B4J1V0 119 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 IGHV1OR15-9A0A0B4J2B8 117 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 NKX2-6A6NCS4 301 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 C9J4A7 227 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 TCAPO15273 167 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 OR2J2O76002 312 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 SCAF4O95104 1147 aaKnown RBP4.21□□□□□ -1.73
LIMA1-214ENST00000552783 IFNA21P01568 189 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 AMBPP02760 352 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 CTSDP07339 412 aaPredicted RBP4.21□□□□□ -1.73
LIMA1-214ENST00000552783 PGA3P0DJD8 388 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 GLIPR1P48060 266 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 AFF3P51826 1226 aaKnown RBP4.21□□□□□ -1.73
LIMA1-214ENST00000552783 SUCLG1P53597 346 aaKnown RBP4.21□□□□□ -1.73
LIMA1-214ENST00000552783 TAS2R46P59540 309 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 NKX6-1P78426 367 aaPredicted RBP4.21□□□□□ -1.73
LIMA1-214ENST00000552783 SMAD4Q13485 552 aaKnown RBP4.21□□□□□ -1.73
LIMA1-214ENST00000552783 FBXW12Q6X9E4 464 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 DPPA2Q7Z7J5 298 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 COMMD1Q8N668 190 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 CPNE4Q96A23 557 aaPredicted RBP4.21□□□□□ -1.73
LIMA1-214ENST00000552783 PGAM5Q96HS1 289 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 C18orf12Q96KH6 178 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 MRPL13Q9BYD1 178 aaKnown RBP4.21□□□□□ -1.73
LIMA1-214ENST00000552783 C11orf1Q9H5F2 150 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 VSIRQ9H7M9 311 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 SLC2A9Q9NRM0 540 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 ANXA10Q9UJ72 324 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 SLC7A11Q9UPY5 501 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 COLQQ9Y215 455 aaPredicted RBP4.21□□□□□ -1.73
LIMA1-214ENST00000552783 WSB1Q9Y6I7 421 aa4.21□□□□□ -1.73
LIMA1-214ENST00000552783 SPENQ96T58 3664 aaKnown RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 IGKV1-27A0A075B6S5 117 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 BORCS7-ASMTA0A0B4J1R7 106 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 LMO7DNF2Z398 122 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 ZNHIT1O43257 154 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 TLX3O43711 291 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-214ENST00000552783 TRAPPC6AO75865 159 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 PNLIPP16233 465 aa4.21□□□□□ -1.74
LIMA1-214ENST00000552783 DAP3P51398 398 aaKnown RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms