RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CLINT1Q14677 625 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 NKAIN1Q4KMZ8 207 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 PYY3Q5JQD4 70 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 HIST2H3PS2Q5TEC6 136 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 RHBDD2Q6NTF9 364 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 FBXW12Q6X9E4 464 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SYT13Q7L8C5 426 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 BATF2Q8N1L9 274 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SLC35G3Q8N808 338 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SUMF1Q8NBK3 374 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 CCDC54Q8NEL0 328 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 TSTD1Q8NFU3 115 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 OR10AD1Q8NGE0 317 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 OR4D5Q8NGN0 318 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SLC22A8Q8TCC7 542 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 MUCL1Q96DR8 90 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF799Q96GE5 643 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 BOD1Q96IK1 185 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 GGACTQ9BVM4 153 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 NELFAQ9H3P2 528 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 KIAA1549Q9HCM3 1950 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 IGSF23A1L1A6 192 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 NKX2-6A6NCS4 301 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 H0YL77 283 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ST8SIA3O43173 380 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 PHF1O43189 567 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 OR2C1O95371 312 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ONECUT2O95948 504 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 CXCL1P09341 107 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 PATE4P0C8F1 98 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 NR2C1P13056 603 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 EPHA1P21709 976 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 OMGP23515 440 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 DTYMKP23919 212 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 FKBP2P26885 142 aaKnown RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ATP6V0CP27449 155 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 NTF4P34130 210 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 NXPH1P58417 271 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ABCA11PQ4W5N1 156 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 C9orf152Q5JTZ5 239 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 C10orf128Q5T292 105 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SP5Q6BEB4 398 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SLC22A25Q6T423 547 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 MEX3BQ6ZN04 569 aaKnown RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 CPEB2Q7Z5Q1 589 aaKnown RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 TMEM123Q8N131 208 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 FADS6Q8N9I5 356 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 OR5L2Q8NGL0 311 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 TMEM54Q969K7 222 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 RASL10BQ96S79 203 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SYT3Q9BQG1 590 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 RBM24Q9BX46 236 aaKnown RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ANGPTL4Q9BY76 406 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 PLEK2Q9NYT0 353 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 FRYQ5TBA9 3013 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SLC33A1O00400 549 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 DHHO43323 396 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 TMEM50AO95807 157 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 HOXA5P20719 270 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 AADACP22760 399 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ITGA3P26006 1051 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 RPS10P46783 165 aaKnown RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ERVFRD-1P60508 538 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 RND3P61587 244 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 RSU1Q15404 277 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SOHLH1Q5JUK2 328 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 FOXL2NBQ6ZUU3 175 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 KMT5CQ86Y97 462 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 LGI3Q8N145 548 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 FBXL14Q8N1E6 418 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ZIC4Q8N9L1 334 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ZFP62Q8NB50 900 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SMRP1Q8NCR6 262 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 Q8WTZ3 238 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 SLAMF9Q96A28 289 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 RAB39BQ96DA2 213 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 PAPOLGQ9BWT3 736 aaKnown RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 MAGT1Q9H0U3 335 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 METTL9Q9H1A3 318 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 GLRX2Q9NS18 164 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 TMED3Q9Y3Q3 217 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 HS3ST3B1Q9Y662 390 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 MTCH2Q9Y6C9 303 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 CHCHD2Q9Y6H1 151 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 KIAA2026Q5HYC2 2103 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 CACNA1EQ15878 2313 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 FREM1Q5H8C1 2179 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 CCDC163A0A0D9SF12 145 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 RBFOX3A6NFN3 312 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 PROB1E7EW31 1015 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 G3V3Y1 287 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 H3BQ15 152 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 WRBO00258 174 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 HSD17B6O14756 317 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 ZNHIT1O43257 154 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 GATCO43716 136 aaKnown RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 NXPH3O95157 252 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 SRP19P09132 144 aaKnown RBP4.68□□□□□ -1.66
LIMA1-212ENST00000552491 GLB1P16278 677 aa4.68□□□□□ -1.66
LIMA1-212ENST00000552491 CRYGSP22914 178 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms