RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PSPNO60542 156 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 TTRP02766 147 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 PRR23D2P0DMB1 279 aaPredicted RBP8.23□□□□□ -1.09
VPS29-208ENST00000550267 GABRR1P24046 479 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 CDK2P24941 298 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 CEACAM3P40198 252 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 ESRRGP62508 458 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 SLC35B1P78383 322 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 MFGE8Q08431 387 aaPredicted RBP8.23□□□□□ -1.09
VPS29-208ENST00000550267 HLA-DRB5Q30154 266 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 OR52W1Q6IF63 320 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 OVCH2Q7RTZ1 564 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 COMMD1Q8N668 190 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 C5orf56Q8N8D9 126 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 SLAMF9Q96A28 289 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 CEP19Q96LK0 163 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 DGCR6LQ9BY27 220 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 CADM1Q9BY67 442 aaKnown RBP8.23□□□□□ -1.09
VPS29-208ENST00000550267 TTTY10Q9BZA0 68 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 DCLRE1BQ9H816 532 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 NUFIP1Q9UHK0 495 aaKnown RBP8.23□□□□□ -1.09
VPS29-208ENST00000550267 UBE2J1Q9Y385 318 aaPredicted RBP8.23□□□□□ -1.09
VPS29-208ENST00000550267 STAB2Q8WWQ8 2551 aa8.23□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A18PA6NE21 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A16PA6NEW6 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A20PA6NIJ5 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A9PA6NNJ1 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A12PA8MX19 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A5PA8MXJ8 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 PRR32B1ATL7 298 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 TOR1AO14656 332 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 HAND1O96004 215 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A15PP0C7V4 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A13PP0C7W8 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A14PP0C7W9 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM90A24PP0C7X0 464 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 FAM106CPP0CH98 169 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 DUSP1P28562 367 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 MNDAP41218 407 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 P2RX3P56373 397 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 RBM39Q14498 530 aaKnown RBP8.22□□□□□ -1.09
VPS29-208ENST00000550267 ZNF260Q3ZCT1 412 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 UTF1Q5T230 341 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 SLX4IPQ5VYV7 408 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 DEGS2Q6QHC5 323 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 SLC35E3Q7Z769 313 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 STPG2Q8N412 459 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 BBS1Q8NFJ9 593 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 OR14K1Q8NGZ2 314 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 OR8U1Q8NH10 309 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 TEX47Q8TBZ9 253 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 EMG1Q92979 244 aaKnown RBP8.22□□□□□ -1.09
VPS29-208ENST00000550267 NIPSNAP1Q9BPW8 284 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 MROQ9BYG7 248 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 DNAJB9Q9UBS3 223 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS29-208ENST00000550267 GTF2A1LQ9UNN4 478 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 U3KQV3 271 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 V9GYS6 101 aa8.22□□□□□ -1.09
VPS29-208ENST00000550267 CSMD3Q7Z407 3707 aa8.21□□□□□ -1.09
VPS29-208ENST00000550267 IGKV1-27A0A075B6S5 117 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 A0A1B0GTI1 187 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 LINC01548A6NM66 108 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 OOSP1A8MZH6 123 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 H3BN98 237 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 MGST3O14880 152 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 PRODHO43272 600 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 CCDC22O60826 627 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 IGHG2P01859 326 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 MRPL3P09001 348 aaKnown RBP8.21□□□□□ -1.1
VPS29-208ENST00000550267 CALCBP10092 127 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 HSD17B1P14061 328 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 TMEM11P17152 192 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 CD34P28906 385 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 OR3A1P47881 315 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 SNU13P55769 128 aaKnown RBP8.21□□□□□ -1.1
VPS29-208ENST00000550267 RPS7P62081 194 aaKnown RBP8.21□□□□□ -1.1
VPS29-208ENST00000550267 ZNF91Q05481 1191 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 KIR2DS1Q14954 304 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 MICAQ29983 383 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 ZNF829Q3KNS6 432 aaPredicted RBP8.21□□□□□ -1.1
VPS29-208ENST00000550267 CCDC144NLQ6NUI1 221 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 HEPN1Q6WQI6 88 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 CPOQ8IVL8 374 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 FOXRED2Q8IWF2 684 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 OR56B4Q8NH76 319 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 GAL3ST2Q9H3Q3 398 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 ZCCHC4Q9H5U6 513 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 ZMAT4Q9H898 229 aa8.21□□□□□ -1.1
VPS29-208ENST00000550267 TRGV10A0A0A0MS01 117 aa8.2□□□□□ -1.1
VPS29-208ENST00000550267 LOC110117498-PIK3R3F6TDL0 507 aa8.2□□□□□ -1.1
VPS29-208ENST00000550267 SIRPB1O00241 398 aa8.2□□□□□ -1.1
VPS29-208ENST00000550267 SRSF10O75494 262 aaKnown RBP8.2□□□□□ -1.1
VPS29-208ENST00000550267 FRMD6-AS1P0C7T7 363 aa8.2□□□□□ -1.1
VPS29-208ENST00000550267 ERP29P30040 261 aaKnown RBP8.2□□□□□ -1.1
VPS29-208ENST00000550267 NPBWR2P48146 333 aa8.2□□□□□ -1.1
VPS29-208ENST00000550267 RIDAP52758 137 aaKnown RBP8.2□□□□□ -1.1
VPS29-208ENST00000550267 PRRX1P54821 245 aa8.2□□□□□ -1.1
VPS29-208ENST00000550267 ROM1Q03395 351 aa8.2□□□□□ -1.1
VPS29-208ENST00000550267 HES1Q14469 280 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms