RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 OR4A16Q8NH70 328 aa13.69□□□□□ -0.22
CUX1-211ENST00000546411 ABCA4P78363 2273 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 PRR19A6NJB7 356 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 DCAF10Q5QP82 559 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 H1FXQ92522 213 aaKnown RBP13.68□□□□□ -0.22
CUX1-211ENST00000546411 IP6K3Q96PC2 410 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 SF3B5Q9BWJ5 86 aaKnown RBP13.68□□□□□ -0.22
CUX1-211ENST00000546411 TNFSF18Q9UNG2 199 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 DIDO1Q9BTC0 2240 aaKnown RBP13.68□□□□□ -0.22
CUX1-211ENST00000546411 IGHV3-43A0A0B4J1X8 118 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 M0R1B8 84 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 CDIPTO14735 213 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 DFFBO76075 338 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 HBE1P02100 147 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 IGHV3-43DP0DP04 118 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 NDUFB7P17568 137 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 SNCAP37840 140 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 TMEM267Q0VDI3 215 aaPredicted RBP13.68□□□□□ -0.22
CUX1-211ENST00000546411 PRAMEF5Q5TYX0 476 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 FNDC7Q5VTL7 733 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 PRAMEF6Q5VXH4 476 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 SARAFQ96BY9 339 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 SSX3Q99909 188 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 AMDHD2Q9Y303 409 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 HPP00738 406 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 RAB31Q13636 194 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 SRXN1Q9BYN0 137 aa13.68□□□□□ -0.22
CUX1-211ENST00000546411 GPR37O15354 613 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 CRYAAP02489 173 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 DAOP14920 347 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 ZBTB25P24278 435 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 SOX8P57073 446 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 FAHD2BQ6P2I3 314 aaPredicted RBP13.67□□□□□ -0.22
CUX1-211ENST00000546411 OR6S1Q8NH40 331 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 CLDN23Q96B33 292 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 FAHD2AQ96GK7 314 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 ANGPTL4Q9BY76 406 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 GPR27Q9NS67 375 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 MYO7BQ6PIF6 2116 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 CDRT15L2A8MXV6 281 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 H7C1Q1 480 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 SCAF4O95104 1147 aaKnown RBP13.67□□□□□ -0.22
CUX1-211ENST00000546411 CST2P09228 141 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 RPL19P84098 196 aaKnown RBP13.67□□□□□ -0.22
CUX1-211ENST00000546411 SPINK9Q5DT21 86 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 POC1BQ8TC44 478 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 CCL28Q9NRJ3 127 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 STARD10Q9Y365 291 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 PPYP01298 95 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 IL2RAP01589 272 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 NDUFA6P56556 154 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 GUK1Q16774 197 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 FDX2Q6P4F2 183 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 OR2M7Q8NG81 312 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 HPSE2Q8WWQ2 592 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 OPA3Q9H6K4 179 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 PSENENQ9NZ42 101 aa13.67□□□□□ -0.22
CUX1-211ENST00000546411 FGF5P12034 268 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 COX6A1P12074 109 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 CEACAM6P40199 344 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 HOXA1P49639 335 aaPredicted RBP13.66□□□□□ -0.22
CUX1-211ENST00000546411 CDCP2Q5VXM1 449 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 HOGA1Q86XE5 327 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 CLRN3Q8NCR9 226 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 LHX4Q969G2 390 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 RPUSD4Q96CM3 377 aaKnown RBP13.66□□□□□ -0.22
CUX1-211ENST00000546411 FBXO17Q96EF6 278 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 TIMP4Q99727 224 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 RASL12Q9NYN1 266 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 TINAGQ9UJW2 476 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 TERTO14746 1132 aaKnown RBP13.66□□□□□ -0.22
CUX1-211ENST00000546411 NGFP01138 241 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 CTSDP07339 412 aaPredicted RBP13.66□□□□□ -0.22
CUX1-211ENST00000546411 METTL15P1P0C7V9 234 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 GABRA4P48169 554 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 IGSF11Q5DX21 431 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 ATP1A1-AS1Q5TC04 95 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 GAPTQ8N292 157 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 OR2C3Q8N628 320 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 AQP3Q92482 292 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 SPAARA0A1B0GVQ0 90 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 OR2C1O95371 312 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 ZNF718Q3SXZ3 478 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 FAM185AQ8N0U4 392 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 OR2Z1Q8NG97 314 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 PTX4Q96A99 478 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 MMP24Q9Y5R2 645 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 CHCHD2Q9Y6H1 151 aaPredicted RBP13.66□□□□□ -0.22
CUX1-211ENST00000546411 DHRS7CA6NNS2 312 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 WISP1O95388 367 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 TRIP6Q15654 476 aaKnown RBP13.66□□□□□ -0.22
CUX1-211ENST00000546411 C4orf17Q53FE4 359 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 HSD17B13Q7Z5P4 300 aaPredicted RBP13.66□□□□□ -0.22
CUX1-211ENST00000546411 TBC1D26Q86UD7 250 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 NECAP1Q8NC96 275 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 TMEM100Q9NV29 134 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 ZNF391Q9UJN7 358 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 TMED3Q9Y3Q3 217 aa13.66□□□□□ -0.22
CUX1-211ENST00000546411 CLEC18AA5D8T8 446 aa13.65□□□□□ -0.22
CUX1-211ENST00000546411 TTLL8A6PVC2 850 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms