RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 PUS1Q9Y606 427 aaKnown RBP eCLIP13.01□□□□□ -0.33
USP28-214ENST00000545540 ARPC4-TTLL3A0A0A6YYG9 625 aa13□□□□□ -0.33
USP28-214ENST00000545540 COLCA2A8K830 154 aa13□□□□□ -0.33
USP28-214ENST00000545540 LYL1P12980 280 aa13□□□□□ -0.33
USP28-214ENST00000545540 Q0VFX4 171 aa13□□□□□ -0.33
USP28-214ENST00000545540 CXorf66Q5JRM2 361 aaPredicted RBP13□□□□□ -0.33
USP28-214ENST00000545540 PRR18Q8N4B5 295 aa13□□□□□ -0.33
USP28-214ENST00000545540 ZNF611Q8N823 705 aa13□□□□□ -0.33
USP28-214ENST00000545540 ANGPTL4Q9BY76 406 aa13□□□□□ -0.33
USP28-214ENST00000545540 A0A1W2PPE2 198 aa13□□□□□ -0.33
USP28-214ENST00000545540 HSD17B6O14756 317 aa13□□□□□ -0.33
USP28-214ENST00000545540 EIF1BO60739 113 aaKnown RBP13□□□□□ -0.33
USP28-214ENST00000545540 SCTP09683 121 aa13□□□□□ -0.33
USP28-214ENST00000545540 ZNF44P15621 663 aa13□□□□□ -0.33
USP28-214ENST00000545540 CRYGSP22914 178 aa13□□□□□ -0.33
USP28-214ENST00000545540 FAM3AP98173 230 aa13□□□□□ -0.33
USP28-214ENST00000545540 P4HA3Q7Z4N8 544 aa13□□□□□ -0.33
USP28-214ENST00000545540 FOXB1Q99853 325 aa13□□□□□ -0.33
USP28-214ENST00000545540 DNAJB11Q9UBS4 358 aa13□□□□□ -0.33
USP28-214ENST00000545540 CNOT1A5YKK6 2376 aaKnown RBP13□□□□□ -0.33
USP28-214ENST00000545540 CTSSP25774 331 aa13□□□□□ -0.33
USP28-214ENST00000545540 GDF1P27539 372 aa13□□□□□ -0.33
USP28-214ENST00000545540 GPM6AP51674 278 aa13□□□□□ -0.33
USP28-214ENST00000545540 STARD6P59095 220 aa13□□□□□ -0.33
USP28-214ENST00000545540 RAC1P63000 192 aa13□□□□□ -0.33
USP28-214ENST00000545540 RUNX1Q01196 453 aa13□□□□□ -0.33
USP28-214ENST00000545540 GUK1Q16774 197 aa13□□□□□ -0.33
USP28-214ENST00000545540 TCEAL6Q6IPX3 200 aa13□□□□□ -0.33
USP28-214ENST00000545540 RHBDD1Q8TEB9 315 aa13□□□□□ -0.33
USP28-214ENST00000545540 TCEAL3Q969E4 200 aa13□□□□□ -0.33
USP28-214ENST00000545540 DUSP23Q9BVJ7 150 aa13□□□□□ -0.33
USP28-214ENST00000545540 WNT5BQ9H1J7 359 aa13□□□□□ -0.33
USP28-214ENST00000545540 TMEM38BQ9NVV0 291 aa13□□□□□ -0.33
USP28-214ENST00000545540 C9J4A7 227 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 JTBO76095 146 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 CD5P06127 495 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 RD3LP0DJH9 198 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 EPHA1P21709 976 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 C10orf91Q5T1B1 145 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 AGBL5Q8NDL9 886 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 NANPQ8TBE9 248 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 RGCCQ9H4X1 137 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 SLC7A10Q9NS82 523 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 CACFD1Q9UGQ2 172 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 TOX3O15405 576 aaPredicted RBP12.99□□□□□ -0.33
USP28-214ENST00000545540 SSSCA1O60232 199 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 EDN3P14138 238 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 COL19A1Q14993 1142 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 EIF5AL1Q6IS14 154 aaKnown RBP12.99□□□□□ -0.33
USP28-214ENST00000545540 CALHM2Q9HA72 323 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 GHRLQ9UBU3 117 aa12.99□□□□□ -0.33
USP28-214ENST00000545540 C7orf77A4D0Y5 90 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 P04436 131 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 TCN2P20062 427 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 BCL3P20749 454 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 HAAOP46952 286 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 HERV-K104P61576 105 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 MRPS34P82930 218 aaKnown RBP12.98□□□□□ -0.33
USP28-214ENST00000545540 HOXA4Q00056 320 aaPredicted RBP12.98□□□□□ -0.33
USP28-214ENST00000545540 HABP2Q14520 560 aaPredicted RBP12.98□□□□□ -0.33
USP28-214ENST00000545540 SFT2D1Q8WV19 159 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 DOCK11Q5JSL3 2073 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 HS3ST1O14792 307 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 CBR3O75828 277 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 NGFP01138 241 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 PPA1Q15181 289 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 C17orf78Q8N4C9 275 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 SAT2Q96F10 170 aaPredicted RBP12.98□□□□□ -0.33
USP28-214ENST00000545540 ZNF727A8MUV8 499 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 ALDH3B1P43353 468 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 DVL1P1P54792 670 aaPredicted RBP12.98□□□□□ -0.33
USP28-214ENST00000545540 HAGHQ16775 308 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 GGNQ86UU5 652 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 TMEM105Q8N8V8 129 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 OR56B2PQ8NGI1 322 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 USB1Q9BQ65 265 aaKnown RBP12.98□□□□□ -0.33
USP28-214ENST00000545540 FBXO9Q9UK97 447 aaPredicted RBP12.98□□□□□ -0.33
USP28-214ENST00000545540 URGCP-MRPS24S4R325 110 aa12.98□□□□□ -0.33
USP28-214ENST00000545540 C5orf49A4QMS7 147 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 ZNF503-AS2A6NEH8 195 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 ZNF133P52736 654 aaPredicted RBP12.97□□□□□ -0.33
USP28-214ENST00000545540 MALLQ13021 153 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 RAB35Q15286 201 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 MSI2Q96DH6 328 aaKnown RBP12.97□□□□□ -0.33
USP28-214ENST00000545540 OR2H1Q9GZK4 316 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 PCED1AQ9H1Q7 454 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 EDARQ9UNE0 448 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 UBE2J1Q9Y385 318 aaPredicted RBP12.97□□□□□ -0.33
USP28-214ENST00000545540 IGKV1D-13A0A0B4J2D9 117 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 FAM166BA8MTA8 275 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 FAM157AC9JC47 383 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 LILRA1O75019 489 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 H2AFB1P0C5Y9 115 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 IGKV1-13P0DP09 117 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 FAM189A2Q15884 450 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 LIAT1Q6ZQX7 453 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 RDH5Q92781 318 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 ZNF700Q9H0M5 742 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 BIN3Q9NQY0 253 aa12.97□□□□□ -0.33
USP28-214ENST00000545540 LOC102725191A0A1B0GVB3 256 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms