RNA–Protein interactions for RNA: ENST00000539712.5

DDB1-215, Transcript of damage specific DNA binding protein 1, human

TSL 2

Gene DDB1, Length 1,020 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-215	ENST00000539712	PEX2	P28328	305 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	ERP29	P30040	261 aa	Known RBP	13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	KIR2DS4	P43632	304 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	EFNB2	P52799	333 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	LGALS4	P56470	323 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	LPCAT4	Q643R3	524 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	SAXO1	Q8IYX7	474 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	OR13D1	Q8NGV5	346 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	RPS4Y2	Q8TD47	263 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	MRPL48	Q96GC5	212 aa	Known RBP	13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	COMMD4	Q9H0A8	199 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	SMPD3	Q9NY59	655 aa	Predicted RBP	13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	GSTK1	Q9Y2Q3	226 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712	KIAA2026	Q5HYC2	2103 aa		13.55	□□□□□ -0.24
DDB1-215	ENST00000539712		A0A0G2JK05	382 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	SIRPB1	O00241	398 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	CLIC3	O95833	236 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	ARG1	P05089	322 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	JUNB	P17275	347 aa	Predicted RBP	13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	ETV1	P50549	477 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	P2RX3	P56373	397 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	MRPL28	Q13084	256 aa	Known RBP	13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	IL18R1	Q13478	541 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	CDK5R1	Q15078	307 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	KISS1	Q15726	138 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	KLHL22	Q53GT1	634 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	BAIAP2L2	Q6UXY1	529 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	SERPINA12	Q8IW75	414 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	OR5AK2	Q8NH90	309 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	MALSU1	Q96EH3	234 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	RDH12	Q96NR8	316 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	TCF7L1	Q9HCS4	588 aa		13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	TBL2	Q9Y4P3	447 aa	Known RBP	13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	SIRT4	Q9Y6E7	314 aa	Predicted RBP	13.54	□□□□□ -0.24
DDB1-215	ENST00000539712	SH2D1B	O14796	132 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	SULT1B1	O43704	296 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	GABRA5	P31644	462 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	GBX2	P52951	348 aa	Predicted RBP	13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	SSX2	Q16385	188 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	ZSCAN26	Q16670	478 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	PLA1A	Q53H76	456 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	ZNF691	Q5VV52	312 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	OR51A2	Q8NGJ7	313 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	OR5D14	Q8NGL3	314 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	CNIH3	Q8TBE1	160 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	CORO2A	Q92828	525 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	MYCBP	Q99417	103 aa	Predicted RBP	13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	RHOF	Q9HBH0	211 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	EXOSC4	Q9NPD3	245 aa	Known RBP	13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	SESN1	Q9Y6P5	492 aa		13.53	□□□□□ -0.24
DDB1-215	ENST00000539712	IGHV2-26	A0A0B4J1V2	119 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712		A6NDX4	124 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712		M0QZ24	198 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	TIMM23	O14925	209 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	RPSA	P08865	295 aa	Known RBP	13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	CCDC159	P0C7I6	412 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	GDNF	P39905	211 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	GLIPR1	P48060	266 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	AES	Q08117	197 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	OR2G6	Q5TZ20	316 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	COQ2	Q96H96	371 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	TMEM133	Q9H2Q1	129 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	RANBP3	Q9H6Z4	567 aa	Predicted RBP	13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	GLS2	Q9UI32	602 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	DHDH	Q9UQ10	334 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	TCF19	Q9Y242	345 aa		13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	UBE2J1	Q9Y385	318 aa	Predicted RBP	13.52	□□□□□ -0.25
DDB1-215	ENST00000539712	SLC33A1	O00400	549 aa	Predicted RBP	13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	TSPAN15	O95858	294 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	LALBA	P00709	142 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	OCM2	P0CE71	109 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	OCM	P0CE72	109 aa	Predicted RBP	13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	TMEM225B	P0DP42	221 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	DCK	P27707	260 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	DYNLT3	P51808	116 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	ADARB1	P78563	741 aa	Known RBP	13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	DYNC1I2	Q13409	638 aa	Known RBP	13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	LRRC36	Q1X8D7	754 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	CCDC58	Q4VC31	144 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	UTF1	Q5T230	341 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	HIST2H2BD	Q6DRA6	164 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	ELP2	Q6IA86	826 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	RPL22L1	Q6P5R6	122 aa	Known RBP	13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	LIAT1	Q6ZQX7	453 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	ZNF485	Q8NCK3	441 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	ZNF555	Q8NEP9	628 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712		Q8NFD4	153 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	FOXRED1	Q96CU9	486 aa	Predicted RBP	13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	CDCA4	Q9BXL8	241 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	MMP27	Q9H306	513 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	RAB18	Q9NP72	206 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	CLEC2D	Q9UHP7	191 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	FOXJ3	Q9UPW0	622 aa		13.51	□□□□□ -0.25
DDB1-215	ENST00000539712	GABRP	O00591	440 aa		13.5	□□□□□ -0.25
DDB1-215	ENST00000539712	OGG1	O15527	345 aa		13.5	□□□□□ -0.25
DDB1-215	ENST00000539712	CSN2	P05814	226 aa		13.5	□□□□□ -0.25
DDB1-215	ENST00000539712	HCK	P08631	526 aa		13.5	□□□□□ -0.25
DDB1-215	ENST00000539712	CGB3	P0DN86	165 aa		13.5	□□□□□ -0.25
DDB1-215	ENST00000539712	CGB7	P0DN87	165 aa		13.5	□□□□□ -0.25
DDB1-215	ENST00000539712	SOX2	P48431	317 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms