RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 CHMP1AQ9HD42 196 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-210ENST00000538120 GHRLQ9UBU3 117 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 ZNF629Q9UEG4 869 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-210ENST00000538120 ANAPC10Q9UM13 185 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 FAM96BQ9Y3D0 163 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 GATCO43716 136 aaKnown RBP9.28□□□□□ -0.92
CLIP1-210ENST00000538120 HLA-HP01893 362 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 CRHP06850 196 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 HIST1H1DP16402 221 aaKnown RBP9.28□□□□□ -0.92
CLIP1-210ENST00000538120 PSMB6P28072 239 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 RAB13P51153 203 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 HTD2P86397 168 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 C1orf185Q5T7R7 199 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 PNLDC1Q8NA58 520 aaKnown RBP9.28□□□□□ -0.92
CLIP1-210ENST00000538120 ZSCAN4Q8NAM6 433 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-210ENST00000538120 FAM216AQ8WUB2 273 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 CPNE2Q96FN4 548 aaPredicted RBP9.28□□□□□ -0.92
CLIP1-210ENST00000538120 CYTL1Q9NRR1 136 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 SLC2A8Q9NY64 477 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 PRSS50Q9UI38 385 aa9.28□□□□□ -0.92
CLIP1-210ENST00000538120 DBX1A6NMT0 343 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 MFNGO00587 321 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 ADAP1O75689 374 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 GSTP1P09211 210 aaKnown RBP9.27□□□□□ -0.93
CLIP1-210ENST00000538120 PI3P19957 117 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 MPZP25189 248 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 TAGLN2P37802 199 aaKnown RBP9.27□□□□□ -0.93
CLIP1-210ENST00000538120 NBL1P41271 181 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 KCNJ3P48549 501 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 HOXA1P49639 335 aaPredicted RBP9.27□□□□□ -0.93
CLIP1-210ENST00000538120 MEF2DQ14814 521 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 NKAPLQ5M9Q1 402 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 LCE2CQ5TA81 110 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 SPSB4Q96A44 273 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 RAB3CQ96E17 227 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 ARHGAP5-AS1Q96IT6 56 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 PRDM14Q9GZV8 571 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 TREM1Q9NP99 234 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 ZNF407Q9C0G0 2248 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 SPP1P10451 314 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 CD79AP11912 226 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 OR8B8Q15620 311 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 MST1LQ2TV78 715 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 ZNF100Q8IYN0 542 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 OR56B1Q8NGI3 324 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 SPSB1Q96BD6 273 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 TM2D1Q9BX74 207 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 RGCCQ9H4X1 137 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 COA4Q9NYJ1 87 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 DLL3Q9NYJ7 618 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 ZNF391Q9UJN7 358 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 DMRT1Q9Y5R6 373 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 DMXL1Q9Y485 3027 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 PTPRBP23467 1997 aa9.27□□□□□ -0.93
CLIP1-210ENST00000538120 F8VVB4 439 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 F8VWA3 439 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 FAM157CP0CG43 387 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 MTCP1P56278 107 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 DHRS7BQ6IAN0 325 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-210ENST00000538120 MCEMP1Q8IX19 187 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 BAP18Q8IXM2 172 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 ZDHHC22Q8N966 263 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 OR51T1Q8NGJ9 327 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 URM1Q9BTM9 101 aaKnown RBP9.26□□□□□ -0.93
CLIP1-210ENST00000538120 OR2S2Q9NQN1 319 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 TMEM100Q9NV29 134 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 OR5AC2Q9NZP5 309 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 TEX13DA0A0J9YY54 714 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-210ENST00000538120 MEX3AA1L020 520 aaKnown RBP9.26□□□□□ -0.93
CLIP1-210ENST00000538120 SLC22A20A6NK97 555 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 ZNF705EA8MWA4 302 aaPredicted RBP9.26□□□□□ -0.93
CLIP1-210ENST00000538120 DUS4LO95620 317 aaKnown RBP9.26□□□□□ -0.93
CLIP1-210ENST00000538120 IGHG3P01860 377 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 CRYBA1P05813 215 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 CCL2P13500 99 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 CEACAM1P13688 526 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 TPT1P13693 172 aaKnown RBP9.26□□□□□ -0.93
CLIP1-210ENST00000538120 SERPINA2P20848 420 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 SLC9A3R2Q15599 337 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 PNLIPRP3Q17RR3 467 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 ASCL4Q6XD76 172 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 SLC30A7Q8NEW0 376 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 STOML3Q8TAV4 291 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 RSRP1Q9BUV0 290 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 HRH4Q9H3N8 390 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.26□□□□□ -0.93
CLIP1-210ENST00000538120 ZFHX4Q86UP3 3567 aa9.26□□□□□ -0.93
CLIP1-210ENST00000538120 FREM1Q5H8C1 2179 aa9.25□□□□□ -0.93
CLIP1-210ENST00000538120 FAM230AA0A1W2PPH8 454 aa9.25□□□□□ -0.93
CLIP1-210ENST00000538120 ATXN7O15265 892 aaPredicted RBP9.25□□□□□ -0.93
CLIP1-210ENST00000538120 XRCC2O43543 280 aa9.25□□□□□ -0.93
CLIP1-210ENST00000538120 IL18BPO95998 194 aa9.25□□□□□ -0.93
CLIP1-210ENST00000538120 NRASP01111 189 aa9.25□□□□□ -0.93
CLIP1-210ENST00000538120 COX5BP10606 129 aa9.25□□□□□ -0.93
CLIP1-210ENST00000538120 NOVA1P51513 510 aaKnown RBP9.25□□□□□ -0.93
CLIP1-210ENST00000538120 HABP2Q14520 560 aaPredicted RBP9.25□□□□□ -0.93
CLIP1-210ENST00000538120 DEFB109BQ30KR1 87 aa9.25□□□□□ -0.93
CLIP1-210ENST00000538120 C10orf91Q5T1B1 145 aa9.25□□□□□ -0.93
CLIP1-210ENST00000538120 RXFP4Q8TDU9 374 aa9.25□□□□□ -0.93
CLIP1-210ENST00000538120 RNF141Q8WVD5 230 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms