RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CFL1P23528 166 aaKnown RBP7.15□□□□□ -1.27
USP28-205ENST00000537706 PSMB9P28065 219 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 SLC9A3P48764 834 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 KRR1Q13601 381 aaKnown RBP7.15□□□□□ -1.27
USP28-205ENST00000537706 TRAM2Q15035 370 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 CTF1Q16619 201 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 SNAI3Q3KNW1 292 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 LGALS9CQ6DKI2 356 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 ACP7Q6ZNF0 438 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 ZNF676Q8N7Q3 588 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 ZNF596Q8TC21 504 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 HIST1H2AAQ96QV6 131 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 SP140LQ9H930 580 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 RASL12Q9NYN1 266 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 LINC00527Q9UJ94 153 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.15□□□□□ -1.27
USP28-205ENST00000537706 SESN1Q9Y6P5 492 aa7.15□□□□□ -1.27
USP28-205ENST00000537706 TRAV27A0A087WT01 109 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 IGHV2-26A0A0B4J1V2 119 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 EFCAB9A8MZ26 197 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 C12orf77C9JDV5 145 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 HSPA12AO43301 675 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 OR8U9P0C7N5 309 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 IFNGR2P38484 337 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 KIR3DL2P43630 455 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 MFGE8Q08431 387 aaPredicted RBP7.14□□□□□ -1.27
USP28-205ENST00000537706 PMS2P11Q13670 270 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 MEP1BQ16820 701 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 MESTQ5EB52 335 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 GPR139Q6DWJ6 353 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 PTCHD4Q6ZW05 846 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 ADCK1Q86TW2 530 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 TRUB1Q8WWH5 349 aaKnown RBP7.14□□□□□ -1.27
USP28-205ENST00000537706 GGHQ92820 318 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 Q96M85 177 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 CLN6Q9NWW5 311 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 ZNF222Q9UK12 451 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 N6AMT1Q9Y5N5 214 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 MPC1Q9Y5U8 109 aa7.14□□□□□ -1.27
USP28-205ENST00000537706 H3BN98 237 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 M0R129 80 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 TBX1O43435 398 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 SOX14O95416 240 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 ZNF182P17025 639 aaPredicted RBP7.13□□□□□ -1.27
USP28-205ENST00000537706 SLC15A1P46059 708 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 GPR12P47775 334 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 ST3GAL3Q11203 375 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 IRF3Q14653 427 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 TAF13Q15543 124 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 SMIM21Q3B7S5 101 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 TMEM236Q5W0B7 351 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 SLC18B1Q6NT16 456 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 LINC00346Q8IVM7 164 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 OR8J1Q8NGP2 316 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 Q96MT0 163 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 ZNF714Q96N38 554 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 FAM110AQ9BQ89 295 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 TMED9Q9BVK6 235 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 PPP1R3EQ9H7J1 279 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 SLC25A19Q9HC21 320 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 VSX1Q9NZR4 365 aaPredicted RBP7.13□□□□□ -1.27
USP28-205ENST00000537706 FGF16O43320 207 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 IGHG2P01859 326 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 DLX6P56179 175 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 SPCS2Q15005 226 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 SLC25A30Q5SVS4 291 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 MEDAGQ5VYS4 303 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 CEMP1Q6PRD7 247 aaPredicted RBP7.13□□□□□ -1.27
USP28-205ENST00000537706 ZNF367Q7RTV3 350 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 RTN4RL2Q86UN3 420 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 Q8N1Y9 231 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 STX19Q8N4C7 294 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 GNPDA2Q8TDQ7 276 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 DCUN1D4Q92564 292 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 KCTD12Q96CX2 325 aaKnown RBP7.13□□□□□ -1.27
USP28-205ENST00000537706 RNF170Q96K19 258 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 NUAK2Q9H093 628 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 RETNQ9HD89 108 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 PCDHB16Q9NRJ7 776 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 ADAM18Q9Y3Q7 739 aa7.13□□□□□ -1.27
USP28-205ENST00000537706 A0A087WUU8 490 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 OOSP1A8MZH6 123 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 PSMD9O00233 223 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 MTRF1O75570 445 aaKnown RBP7.12□□□□□ -1.27
USP28-205ENST00000537706 HLA-DQA2P01906 255 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 C21orf33P30042 268 aaPredicted RBP7.12□□□□□ -1.27
USP28-205ENST00000537706 PRDX2P32119 198 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 PITPNAQ00169 270 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 ST3GAL4Q11206 333 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 TSPAN31Q12999 210 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 HES1Q14469 280 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 SMARCD3Q6STE5 483 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 ZNF730Q6ZMV8 503 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 LINC00299Q6ZSB3 139 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 THNSL2Q86YJ6 484 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 RNF152Q8N8N0 203 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 TEX47Q8TBZ9 253 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 RNF166Q96A37 237 aaPredicted RBP7.12□□□□□ -1.27
USP28-205ENST00000537706 SPSB4Q96A44 273 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 ELOVL1Q9BW60 279 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms