RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 RUSC1-AS1Q66K80 236 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 TCF23Q7RTU1 214 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 CDH26Q8IXH8 852 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 ASCC1Q8N9N2 400 aaKnown RBP10.63□□□□□ -0.71
VPS28-216ENST00000533806 OR4S1Q8NGB4 309 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 OR5D13Q8NGL4 314 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 SPATA3Q8NHX4 192 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 TBC1D15Q8TC07 691 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 TNFAIP8L1Q8WVP5 186 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 LHX4Q969G2 390 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 CPNE2Q96FN4 548 aaPredicted RBP10.63□□□□□ -0.71
VPS28-216ENST00000533806 JMJD8Q96S16 334 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 NKX3-1Q99801 234 aaPredicted RBP10.63□□□□□ -0.71
VPS28-216ENST00000533806 METTL8Q9H825 291 aaKnown RBP10.63□□□□□ -0.71
VPS28-216ENST00000533806 IL36GQ9NZH8 169 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 GSTK1Q9Y2Q3 226 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 A0A0G2JK05 382 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 A0A1W2PQ09 198 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 C17orf98A8MV24 154 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 CLDN34H7C241 214 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 ERP29P30040 261 aaKnown RBP10.62□□□□□ -0.71
VPS28-216ENST00000533806 ZNF93P35789 620 aaPredicted RBP10.62□□□□□ -0.71
VPS28-216ENST00000533806 MAP2K4P45985 399 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 MTNR1BP49286 362 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 MEF2CQ06413 473 aaPredicted RBP10.62□□□□□ -0.71
VPS28-216ENST00000533806 ZNF273Q14593 569 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 MED22Q15528 200 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 DEFB112Q30KQ8 113 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 ACSM3Q53FZ2 586 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 NHLRC3Q5JS37 347 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 DDI2Q5TDH0 399 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 FIP1L1Q6UN15 594 aaKnown RBP10.62□□□□□ -0.71
VPS28-216ENST00000533806 SATL1Q86VE3 508 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 FAM216AQ8WUB2 273 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 THRSPQ92748 146 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 AJUBAQ96IF1 538 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 C19orf24Q9BVV8 132 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 PPIL3Q9H2H8 161 aaKnown RBP10.62□□□□□ -0.71
VPS28-216ENST00000533806 NOX4Q9NPH5 578 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 SIRT7Q9NRC8 400 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 CKLFQ9UBR5 152 aa10.62□□□□□ -0.71
VPS28-216ENST00000533806 SF3B6Q9Y3B4 125 aaKnown RBP10.62□□□□□ -0.71
VPS28-216ENST00000533806 MDFIC2A0A1B0GVS7 189 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 MGST3O14880 152 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 CDRT1O95170 752 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 CSN2P05814 226 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 CCL3L1P16619 93 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 GABRR1P24046 479 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 BMXP51813 675 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 UBE2E1P51965 193 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 SNU13P55769 128 aaKnown RBP10.61□□□□□ -0.71
VPS28-216ENST00000533806 ERVFRD-1P60508 538 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 UBA52P62987 128 aaKnown RBP10.61□□□□□ -0.71
VPS28-216ENST00000533806 PRB3Q04118 309 aaPredicted RBP10.61□□□□□ -0.71
VPS28-216ENST00000533806 TBCEQ15813 527 aaPredicted RBP10.61□□□□□ -0.71
VPS28-216ENST00000533806 LIPKQ5VXJ0 399 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 Q6YL49 198 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 TMEM91Q6ZNR0 172 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 LRRTM1Q86UE6 522 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 FAM185AQ8N0U4 392 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 CHST4Q8NCG5 386 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 OR10K1Q8NGX5 313 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 GPER1Q99527 375 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 CHST6Q9GZX3 395 aa10.61□□□□□ -0.71
VPS28-216ENST00000533806 EXOSC4Q9NPD3 245 aaKnown RBP10.61□□□□□ -0.71
VPS28-216ENST00000533806 DNAJC9-AS1A6NH13 148 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 SIRPB1O00241 398 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 SLC33A1O00400 549 aaPredicted RBP10.6□□□□□ -0.71
VPS28-216ENST00000533806 MRPS14O60783 128 aaKnown RBP10.6□□□□□ -0.71
VPS28-216ENST00000533806 RBP4P02753 201 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 UCHL1P09936 223 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 CPEP16870 476 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 MAPK3P27361 379 aaPredicted RBP10.6□□□□□ -0.71
VPS28-216ENST00000533806 GABARAPL2P60520 117 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 PAX5Q02548 391 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 EMX1Q04741 257 aaPredicted RBP10.6□□□□□ -0.71
VPS28-216ENST00000533806 MLLT11Q13015 90 aaPredicted RBP10.6□□□□□ -0.71
VPS28-216ENST00000533806 KLRD1Q13241 179 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 BLMHQ13867 455 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 SLC9A3R2Q15599 337 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 GRK1Q15835 563 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 FAM27D1Q5T7N8 215 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 NCR3LG1Q68D85 454 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 GDPD3Q7L5L3 318 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.6□□□□□ -0.71
VPS28-216ENST00000533806 MGLLQ99685 303 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 TMED9Q9BVK6 235 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 YTHDF1Q9BYJ9 559 aaKnown RBP10.6□□□□□ -0.71
VPS28-216ENST00000533806 METTL9Q9H1A3 318 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 IFT22Q9H7X7 185 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 ACOT13Q9NPJ3 140 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 ZNF581Q9P0T4 197 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 GLS2Q9UI32 602 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 BLOC1S6Q9UL45 172 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 LINC00312Q9Y6C7 94 aa10.6□□□□□ -0.71
VPS28-216ENST00000533806 TRAV24A0A0B4J272 114 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 A0A0U1RQK1 487 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 A0A1W2PPH5 198 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 TRIM77I1YAP6 450 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 DEGS1O15121 323 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms