RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	TRGC1	P0CF51	173 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	HIST1H1T	P22492	207 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	GABRA3	P34903	492 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	BSG	P35613	385 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	TAS2R41	P59536	307 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	PLP1	P60201	277 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	RPS23	P62266	143 aa	Known RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SNRPG	P62308	76 aa	Known RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	RPS25	P62851	125 aa	Known RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	CDK3	Q00526	305 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	HMGCS1	Q01581	520 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SSBP1	Q04837	148 aa	Known RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ST3GAL4	Q11206	333 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	DHRS2	Q13268	280 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	MEF2D	Q14814	521 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	KIR2DS3	Q14952	304 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ELOB	Q15370	118 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	IL17A	Q16552	155 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	LTC4S	Q16873	150 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ARHGAP11B	Q3KRB8	267 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	PDZD11	Q5EBL8	140 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	TFDP3	Q5H9I0	405 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	TPTE2P1	Q5T6R2	138 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF776	Q68DI1	518 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF324B	Q6AW86	544 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	DHRS11	Q6UWP2	260 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	BTNL8	Q6UX41	500 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	FOXI2	Q6ZQN5	318 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ZCCHC23	Q6ZST2	131 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	GTF2H5	Q6ZYL4	71 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SIAH3	Q8IW03	269 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SLC39A11	Q8N1S5	342 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SYS1	Q8N2H4	156 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	OR10G4	Q8NGN3	311 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	OR6K2	Q8NGY2	324 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	MARCH1	Q8TCQ1	289 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF418	Q8TF45	676 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	EMG1	Q92979	244 aa	Known RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	PIGT	Q969N2	578 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	IGSF8	Q969P0	613 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	FAM131C	Q96AQ9	280 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	LRRC3B	Q96PB8	259 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ATF6B	Q99941	703 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	PYGO2	Q9BRQ0	406 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	CABLES2	Q9BTV7	478 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF471	Q9BX82	626 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SLC39A8	Q9C0K1	460 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SPATC1L	Q9H0A9	340 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ATG5	Q9H1Y0	275 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	C6orf106	Q9H6K1	298 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	UBE2Z	Q9H832	354 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SRD5A3	Q9H8P0	318 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	A4GALT	Q9NPC4	353 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	HINT3	Q9NQE9	182 aa	Known RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ASF1B	Q9NVP2	202 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	NECAP2	Q9NVZ3	263 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	CISD1	Q9NZ45	108 aa	Known RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ONECUT1	Q9UBC0	465 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	ERG28	Q9UKR5	140 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	PLAGL1	Q9UM63	463 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	MRPS33	Q9Y291	106 aa	Known RBP	4.8	□□□□□ -1.64
CD44-231	ENST00000531110	SIGLEC9	Q9Y336	463 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	STYXL1	Q9Y6J8	313 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	PATJ	Q8NI35	1801 aa		4.8	□□□□□ -1.64
CD44-231	ENST00000531110	MAST2	Q6P0Q8	1798 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	IGLV5-37	A0A075B6J1	123 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	C13orf42	A0A1B0GVH6	325 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	LINC01553	A4QN01	128 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SLC22A20	A6NK97	555 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF705G	A8MUZ8	300 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110		F5H5T6	163 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110		M0QZ24	198 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	PLPP2	O43688	288 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	OR1F1	O43749	312 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	FGF17	O60258	216 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	ENTPD6	O75354	484 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	CLDN11	O75508	207 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	NDUFB6	O95139	128 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	NRAS	P01111	189 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	HLA-DPB1	P04440	258 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	REG1A	P05451	166 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SERPINA7	P05543	415 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	DBI	P07108	87 aa	Known RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	CTSL	P07711	333 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	MMP7	P09237	267 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	C8orf89	P0DMQ9	161 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	AZU1	P20160	251 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	EDN2	P20800	178 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	HTR1D	P28221	377 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	FAU	P35544	74 aa	Known RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	CHI3L1	P36222	383 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	HMGCS2	P54868	508 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	MFAP4	P55083	255 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	ATP5J2	P56134	94 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	TAS2R30	P59541	319 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SNRPF	P62306	86 aa	Known RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	RPL7A	P62424	266 aa	Known RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	LCN6	P62502	163 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	ST3GAL3	Q11203	375 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	MFAP5	Q13361	173 aa		4.79	□□□□□ -1.64

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