RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 RNF212Q495C1 297 aa16.65■□□□□ 0.26
VPS28-213ENST00000530983 GPR157Q5UAW9 335 aa16.65■□□□□ 0.26
VPS28-213ENST00000530983 AAED1Q7RTV5 226 aa16.65■□□□□ 0.26
VPS28-213ENST00000530983 OR14L1PQ8NHC6 308 aa16.65■□□□□ 0.26
VPS28-213ENST00000530983 FOXB1Q99853 325 aa16.65■□□□□ 0.26
VPS28-213ENST00000530983 OR2H1Q9GZK4 316 aa16.65■□□□□ 0.26
VPS28-213ENST00000530983 ZNF391Q9UJN7 358 aa16.65■□□□□ 0.26
VPS28-213ENST00000530983 KPTNQ9Y664 436 aa16.65■□□□□ 0.26
VPS28-213ENST00000530983 CXCL13O43927 109 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 PDCD6O75340 191 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 TCN2P20062 427 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 DUSP1P28562 367 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 RGS19P49795 217 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 FUT6P51993 359 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 UCP2P55851 309 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 ZNF616Q08AN1 781 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 LGI3Q8N145 548 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 ZNF561Q8N587 486 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 HPSE2Q8WWQ2 592 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 RPS10P5Q9NQ39 176 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 TRBV23-1A0A0A0MS06 115 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 BORCS7-ASMTA0A0B4J1R7 106 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 UCP3P55916 312 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 OR8B8Q15620 311 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 CEACAM16Q2WEN9 425 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 FBXW12Q6X9E4 464 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 ZNF600Q6ZNG1 722 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.64■□□□□ 0.25
VPS28-213ENST00000530983 SH3BGRL3Q9H299 93 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 RGCCQ9H4X1 137 aa16.64■□□□□ 0.25
VPS28-213ENST00000530983 METTL1Q9UBP6 276 aaKnown RBP16.64■□□□□ 0.25
VPS28-213ENST00000530983 PHF1O43189 567 aaPredicted RBP16.63■□□□□ 0.25
VPS28-213ENST00000530983 RFPL3SP0C7P2 107 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 AADACP22760 399 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 RBM11P57052 281 aaKnown RBP16.63■□□□□ 0.25
VPS28-213ENST00000530983 NHLH2Q02577 135 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 IL13RA2Q14627 380 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 PLCXD3Q63HM9 321 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 PMS2CLQ68D20 193 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 CALHM1Q8IU99 346 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 KDF1Q8NAX2 398 aaPredicted RBP16.63■□□□□ 0.25
VPS28-213ENST00000530983 KCNE4Q8WWG9 221 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 PIGCQ92535 297 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 TP53RKQ96S44 253 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 SYT3Q9BQG1 590 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 RSRP1Q9BUV0 290 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 NOSIPQ9Y314 301 aaKnown RBP16.63■□□□□ 0.25
VPS28-213ENST00000530983 CCDC163A0A0D9SF12 145 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 C1QL1O75973 258 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 IGHV2-70P01814 119 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 MT-ND4LP03901 98 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 S100PP25815 95 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 NOVA1P51513 510 aaKnown RBP16.63■□□□□ 0.25
VPS28-213ENST00000530983 MALLQ13021 153 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 CDCP2Q5VXM1 449 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 ABLIM2Q6H8Q1 611 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 ADGRG7Q96K78 797 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 SGCZQ96LD1 299 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 IER2Q9BTL4 223 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 LUZP4Q9P127 313 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 SLC7A11Q9UPY5 501 aa16.63■□□□□ 0.25
VPS28-213ENST00000530983 A6NLC8 198 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 ZNF587BE7ETH6 402 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 ST8SIA3O43173 380 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 TXNL1O43396 289 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 EDN3P14138 238 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 HMGN3Q15651 99 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 GUK1Q16774 197 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 COMMD1Q8N668 190 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 SLC35G3Q8N808 338 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 ISOC2Q96AB3 205 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 RCL1Q9Y2P8 373 aaKnown RBP16.62■□□□□ 0.25
VPS28-213ENST00000530983 NTN3O00634 580 aaPredicted RBP16.62■□□□□ 0.25
VPS28-213ENST00000530983 IGHV2-5P01817 119 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 PMELP40967 661 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 FOLR3P41439 243 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 GLP1RP43220 463 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 CAMLGP49069 296 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 CLDN15P56746 228 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 BATF2Q8N1L9 274 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 OR4D5Q8NGN0 318 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 OR10D3Q8NH80 312 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 TCEAL7Q9BRU2 100 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 GPR35Q9HC97 309 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 P4HTMQ9NXG6 502 aa16.62■□□□□ 0.25
VPS28-213ENST00000530983 ZNF816-ZNF321PA0A0X1KG74 233 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 YKT6O15498 198 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 CLN5O75503 358 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 P04436 131 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 OR8U8P0C7N1 319 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 ZNF14P17017 642 aaPredicted RBP16.61■□□□□ 0.25
VPS28-213ENST00000530983 LMO1P25800 156 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 NPBWR2P48146 333 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 ZFP36L1Q07352 338 aaKnown RBP16.61■□□□□ 0.25
VPS28-213ENST00000530983 ACER2Q5QJU3 275 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 RIPPLY2Q5TAB7 128 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 TMEM211Q6ICI0 200 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 PRO3102Q9H379 93 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 ZNF442Q9H7R0 627 aa16.61■□□□□ 0.25
VPS28-213ENST00000530983 C19orf12Q9NSK7 152 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms