RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 RAG2P55895 527 aa17.93■□□□□ 0.46
VPS28-212ENST00000530836 HOGA1Q86XE5 327 aa17.93■□□□□ 0.46
VPS28-212ENST00000530836 C11orf53Q8IXP5 236 aa17.93■□□□□ 0.46
VPS28-212ENST00000530836 IL19Q9UHD0 177 aa17.93■□□□□ 0.46
VPS28-212ENST00000530836 CADP27708 2225 aa17.93■□□□□ 0.46
VPS28-212ENST00000530836 A6NLC8 198 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 NXPH2O95156 264 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 ADH4P08319 380 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 CFHR2P36980 270 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 BTG1P62324 171 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 RNASE10Q5GAN6 216 aaKnown RBP17.92■□□□□ 0.46
VPS28-212ENST00000530836 RSBN1Q5VWQ0 802 aaPredicted RBP17.92■□□□□ 0.46
VPS28-212ENST00000530836 ZNF782Q6ZMW2 699 aaPredicted RBP17.92■□□□□ 0.46
VPS28-212ENST00000530836 BTN2A1Q7KYR7 527 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 OR10Z1Q8NGY1 313 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 FBXW5Q969U6 566 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 HS3ST6Q96QI5 342 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 CMSS1Q9BQ75 279 aaKnown RBP17.92■□□□□ 0.46
VPS28-212ENST00000530836 FAAP24Q9BTP7 215 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 CLEC4MQ9H2X3 399 aaPredicted RBP17.92■□□□□ 0.46
VPS28-212ENST00000530836 HES4Q9HCC6 221 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 RASL12Q9NYN1 266 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 GLS2Q9UI32 602 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 RNF115Q9Y4L5 304 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 FBN2P35556 2912 aa17.92■□□□□ 0.46
VPS28-212ENST00000530836 HLA-DMAP28067 261 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 GATA4P43694 442 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 IKZF1Q13422 519 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 ZNF146Q15072 292 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 ZMYND11Q15326 602 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 ATAD3CQ5T2N8 411 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 WDR82Q6UXN9 313 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 RTN4RL2Q86UN3 420 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 GVQW1Q8N7I0 195 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 ERGIC1Q969X5 290 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 UPRTQ96BW1 309 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 MEGF10Q96KG7 1140 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 ZNF488Q96MN9 340 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 SULT4A1Q9BR01 284 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 TMEM204Q9BSN7 226 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 FN3KRPQ9HA64 309 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 AK3Q9UIJ7 227 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 ABCA4P78363 2273 aa17.91■□□□□ 0.46
VPS28-212ENST00000530836 DISC1C4P0D8 188 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 MCRIP1C9JLW8 97 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 INMT-MINDY4F8WBC2 141 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 PFDN1O60925 122 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 SERPINF1P36955 418 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 CCR6P51684 374 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 RBM39Q14498 530 aaKnown RBP17.9■□□□□ 0.46
VPS28-212ENST00000530836 RBMS2Q15434 407 aaKnown RBP17.9■□□□□ 0.46
VPS28-212ENST00000530836 PRAMEF6Q5VXH4 476 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 SFRP4Q6FHJ7 346 aaPredicted RBP17.9■□□□□ 0.46
VPS28-212ENST00000530836 BATF2Q8N1L9 274 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 OR56B4Q8NH76 319 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 GTF3AQ92664 365 aaKnown RBP17.9■□□□□ 0.46
VPS28-212ENST00000530836 OR2V2Q96R30 315 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 SCP2D1Q9UJQ7 156 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 SPRY3O43610 288 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 DHFRP00374 187 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 APOBEC3AP31941 199 aaPredicted RBP17.9■□□□□ 0.46
VPS28-212ENST00000530836 TAS2R46P59540 309 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 OR4K15Q8NH41 348 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 RIMS4Q9H426 269 aaPredicted RBP17.9■□□□□ 0.46
VPS28-212ENST00000530836 C12orf4Q9NQ89 552 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 NUDT15Q9NV35 164 aa17.9■□□□□ 0.46
VPS28-212ENST00000530836 A0A1W2PPR1 153 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 POM121CA8CG34 1229 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 SH2D1BO14796 132 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 DEGS1O15121 323 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 NDUFB6O95139 128 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 MPPED2Q15777 294 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 VAX1Q5SQQ9 334 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 GLCCI1Q86VQ1 547 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 FAM90A1Q86YD7 464 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 BEST4Q8NFU0 473 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 OR4S1Q8NGB4 309 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 PRRT1Q99946 306 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 SLC25A21Q9BQT8 299 aaPredicted RBP17.89■□□□□ 0.45
VPS28-212ENST00000530836 ST6GALNAC5Q9BVH7 336 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 C1orf123Q9NWV4 160 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 SLC2A8Q9NY64 477 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 SETXQ7Z333 2677 aaKnown RBP17.89■□□□□ 0.45
VPS28-212ENST00000530836 TACC2O95359 2948 aa17.89■□□□□ 0.45
VPS28-212ENST00000530836 hCG_1807616A0A1W2PRN6 198 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 PLAUP00749 431 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 IGHV1-46P01743 117 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 CD55P08174 381 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 AMY2BP19961 511 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 SNU13P55769 128 aaKnown RBP17.88■□□□□ 0.45
VPS28-212ENST00000530836 TNFAIP6P98066 277 aaPredicted RBP17.88■□□□□ 0.45
VPS28-212ENST00000530836 EFNB3Q15768 340 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 SRSF7Q16629 238 aaKnown RBP eCLIP17.88■□□□□ 0.45
VPS28-212ENST00000530836 SMIM21Q3B7S5 101 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 FAAP20Q6NZ36 180 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 CADM3Q8N126 398 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 OR4D10Q8NGI6 311 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 SNAPC3Q92966 411 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 UFSP2Q9NUQ7 469 aa17.88■□□□□ 0.45
VPS28-212ENST00000530836 ZNF701Q9NV72 531 aaPredicted RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms