RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 UCNP55089 124 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 OR10A3P58181 314 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 ZNF121P58317 390 aaPredicted RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 LSM6P62312 80 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 RPL23AP62750 156 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 MRPS34P82930 218 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 FOXF2Q12947 444 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 FAM189A2Q15884 450 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 SLC25A35Q3KQZ1 300 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 ZNF404Q494X3 552 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 Q499Y3 187 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 ACSF3Q4G176 576 aaPredicted RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 HSD17B12Q53GQ0 312 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 C6orf183Q5T699 404 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 IDNKQ5T6J7 187 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 BCL2L15Q5TBC7 163 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 PRAMEF5Q5TYX0 476 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 PRAMEF6Q5VXH4 476 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 UNQ9370/PRO34162Q6UXP9 181 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 C3P1Q6ZMU1 363 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 RFPL4BQ6ZWI9 263 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 FAM57BQ71RH2 274 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 SLC16A14Q7RTX9 510 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 NOXA1Q86UR1 476 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 NAA40Q86UY6 237 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 LAX1Q8IWV1 398 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 SKA3Q8IX90 412 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 SELENOHQ8IZQ5 122 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 SLC22A24Q8N4F4 322 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 RPRMLQ8N4K4 120 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 MS4A15Q8N5U1 240 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 GJC3Q8NFK1 279 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 OR8B12Q8NGG6 310 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 OR13C3Q8NGS6 347 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 WIPF2Q8TF74 440 aaPredicted RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 RAB1CQ92928 201 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 DVL3Q92997 716 aaPredicted RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 SLC25A46Q96AG3 418 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 DAZAP1Q96EP5 407 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 RRNAD1Q96FB5 475 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 GPR137Q96N19 417 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 DERL3Q96Q80 235 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 GFI1Q99684 422 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 NKX3-1Q99801 234 aaPredicted RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 ATF6BQ99941 703 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 C7orf50Q9BRJ6 194 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 ALKBH7Q9BT30 221 aaPredicted RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 LINC00470Q9BZP3 86 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 NXF2Q9GZY0 626 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 PBOV1Q9GZY1 135 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 COMMD4Q9H0A8 199 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 KCNN2Q9H2S1 579 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 MMP27Q9H306 513 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 GAL3ST2Q9H3Q3 398 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 RIMS4Q9H426 269 aaPredicted RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 RNF122Q9H9V4 155 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 SIAEQ9HAT2 523 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 NOX3Q9HBY0 568 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 UFSP2Q9NUQ7 469 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 FAM206AQ9NX38 181 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 PLEK2Q9NYT0 353 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 PLEKHB1Q9UF11 243 aaPredicted RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 OR52A1Q9UKL2 312 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 AK6Q9Y3D8 172 aaKnown RBP3.58□□□□□ -1.84
CD44-226ENST00000527889 TACC2O95359 2948 aa3.58□□□□□ -1.84
CD44-226ENST00000527889 HIVEP1P15822 2718 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 NBEAL2Q6ZNJ1 2754 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 TRAV8-7A0A075B6U6 113 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 TRBV5-7A0A0A0MS05 114 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 TRAV1-2A0A0B4J238 106 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 C13orf42A0A1B0GVH6 325 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 IQCMA0A1B0GVH7 501 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 A0A1W2PR80 420 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 OR6C6A6NF89 314 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 F5H5K5 113 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 M0R135 149 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 ITGB1BP1O14713 200 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 BET1O15155 118 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 RGS5O15539 181 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 SYNGR3O43761 229 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 HPGDSO60760 199 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 SS18L1O75177 396 aaPredicted RBP3.57□□□□□ -1.84
CD44-226ENST00000527889 GATBO75879 557 aaKnown RBP3.57□□□□□ -1.84
CD44-226ENST00000527889 LYZL6O75951 148 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 DFFBO76075 338 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 FARS2O95363 451 aaKnown RBP3.57□□□□□ -1.84
CD44-226ENST00000527889 HLA-HP01893 362 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 TTRP02766 147 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 MAS1P04201 325 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 MMP7P09237 267 aaPredicted RBP3.57□□□□□ -1.84
CD44-226ENST00000527889 ACSM4P0C7M7 580 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 OCMP0CE72 109 aaPredicted RBP3.57□□□□□ -1.84
CD44-226ENST00000527889 NQO2P16083 231 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 ADRA2CP18825 462 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 ATF1P18846 271 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 ANXA7P20073 488 aaKnown RBP3.57□□□□□ -1.84
CD44-226ENST00000527889 RAB3BP20337 219 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 NPR2P20594 1047 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 ACHEP22303 614 aa3.57□□□□□ -1.84
CD44-226ENST00000527889 HTR5AP47898 357 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms