RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 TCTEX1D2Q8WW35 142 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 LRRC58Q96CX6 371 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 RCN3Q96D15 328 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 TSC22D3Q99576 134 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 SLC6A7Q99884 636 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 MRPL37Q9BZE1 423 aaKnown RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 CHIAQ9BZP6 476 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 RIBC2Q9H4K1 309 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 NEK6Q9HC98 313 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 BCL2L10Q9HD36 194 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 SLC35D1Q9NTN3 355 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 CMTM6Q9NX76 183 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 THUMPD1Q9NXG2 353 aaKnown RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 CALML5Q9NZT1 146 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 RIMS3Q9UJD0 308 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 ANGPT4Q9Y264 503 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 ZNF443Q9Y2A4 671 aaPredicted RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 SLC35A3Q9Y2D2 325 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 CACNG2Q9Y698 323 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 RAI1Q7Z5J4 1906 aaPredicted RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 ATMQ13315 3056 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 SETXQ7Z333 2677 aaKnown RBP2.71□□□□□ -1.98
CD44-219ENST00000525685 COL6A6A6NMZ7 2263 aa2.71□□□□□ -1.98
CD44-219ENST00000525685 KIAA1549Q9HCM3 1950 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 FASNP49327 2511 aaKnown RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 LOC100506127A0A0U1RQW1 187 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 TMEM72A0PK05 275 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 FAM231BA6NCW3 169 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 H3BNH8 94 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 NME4O00746 187 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 AIM2O14862 343 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 GATCO43716 136 aaKnown RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 EFNA2O43921 213 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 TPST1O60507 370 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 EIF4E2O60573 245 aaKnown RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 GCM2O75603 506 aaPredicted RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 DCTN3O75935 186 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 EPPINO95925 133 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 FAM107AO95990 144 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 IGLV1-47P01700 117 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 OPN1SWP03999 348 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 DBIP07108 87 aaKnown RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 GKN3PP0CG01 181 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 GABRA1P14867 456 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 ETS2P15036 469 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 PGCP20142 388 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 ELK4P28324 431 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 AQP1P29972 269 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 NUDT2P50583 147 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 SUCLG1P53597 346 aaKnown RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 PRRX1P54821 245 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 CDK6Q00534 326 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 EWSR1Q01844 656 aaKnown RBP eCLIP2.7□□□□□ -1.98
CD44-219ENST00000525685 PJVKQ0ZLH3 352 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 SELENBP1Q13228 472 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 ARFRP1Q13795 201 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 ZMYND11Q15326 602 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 TATDN3Q17R31 274 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 SAPCD1Q5SSQ6 148 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 THEM4Q5T1C6 240 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 NCR3LG1Q68D85 454 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 NANOGP8Q6NSW7 305 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 DEGS2Q6QHC5 323 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 METAP1DQ6UB28 335 aaPredicted RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 ENPP6Q6UWR7 440 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 EIF3MQ7L2H7 374 aaKnown RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 ARPINQ7Z6K5 226 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 TPRA1Q86W33 373 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 CALHM3Q86XJ0 350 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 SKA3Q8IX90 412 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 LINC01561Q8N1V8 128 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 C15orf54Q8N8G6 183 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 OR10Z1Q8NGY1 313 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 OR5W2Q8NH69 310 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 OR10A6Q8NH74 314 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 GPR119Q8TDV5 335 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 ITLN2Q8WWU7 325 aaPredicted RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 ST8SIA1Q92185 356 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 DCUN1D4Q92564 292 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 THRSPQ92748 146 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 TAMM41Q96BW9 452 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 RNF145Q96MT1 663 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 TECTBQ96PL2 329 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 RSPO3Q9BXY4 272 aaPredicted RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 GPR61Q9BZJ8 451 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 POLR2J2Q9GZM3 115 aaKnown RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 NDEL1Q9GZM8 345 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 POLR2J3Q9H1A7 115 aaKnown RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 TMEM38AQ9H6F2 299 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 TMEM185BQ9H7F4 350 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 NANOGQ9H9S0 305 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 INIPQ9NRY2 104 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 ARMC1Q9NVT9 282 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 STX18Q9P2W9 335 aaKnown RBP2.7□□□□□ -1.98
CD44-219ENST00000525685 ONECUT1Q9UBC0 465 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 CLCF1Q9UBD9 225 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 GNG12Q9UBI6 72 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 ARL2BPQ9Y2Y0 163 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 ZNF337Q9Y3M9 751 aa2.7□□□□□ -1.98
CD44-219ENST00000525685 FAM32AQ9Y421 112 aaKnown RBP2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms