RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CT45A9P0DMV2 189 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 LIPCP11150 499 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 HLA-EP13747 358 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 MMP11P24347 488 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 HTR2AP28223 471 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 BRS3P32247 399 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 RAB5CP51148 216 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 RIPPLY3P57055 190 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 BTG2P78543 158 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 CAV1Q03135 178 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 MLLT11Q13015 90 aaPredicted RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 SLC10A1Q14973 349 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 KIAA0040Q15053 153 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 RSU1Q15404 277 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 TAF9Q16594 264 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 CEACAM21Q3KPI0 293 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 GLYR1Q49A26 553 aaPredicted RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 CT45A2Q5DJT8 189 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 MESTQ5EB52 335 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 GPRC6AQ5T6X5 926 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 HENMT1Q5T8I9 393 aaKnown RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 OR2A2Q6IF42 318 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 FAM71E1Q6IPT2 247 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 STEAP1BQ6NZ63 245 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 PNCKQ6P2M8 343 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 FAHD1Q6P587 224 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 SMARCD3Q6STE5 483 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 CBLN3Q6UW01 205 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 UQCC3Q6UW78 93 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 ADAMTSL5Q6ZMM2 481 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 DPY19L4Q7Z388 723 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 SLC35E3Q7Z769 313 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 TIAM2Q8IVF5 1701 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 H1FOOQ8IZA3 346 aaPredicted RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 MTURNQ8N3F0 131 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 ZNF664Q8N3J9 261 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 SMIM20Q8N5G0 67 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 TMEM251Q8N6I4 163 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 ARIH2OSQ8N7S6 290 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 SDR9C7Q8NEX9 313 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 OR1P1Q8NH06 330 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 OR4C6Q8NH72 309 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 COQ8AQ8NI60 647 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 FBXO25Q8TCJ0 367 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 SPPL2BQ8TCT7 592 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 RNASEH2CQ8TDP1 164 aaKnown RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 RAB2BQ8WUD1 216 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 NAT6Q93015 286 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 PYURFQ96I23 114 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 OR10C1Q96KK4 312 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 C12orf42Q96LP6 360 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 HYLS1Q96M11 299 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 Q96MT0 163 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 OR52E6Q96RD3 313 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 SPAG8Q99932 426 aaPredicted RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 KCTD14Q9BQ13 255 aaPredicted RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 C20orf24Q9BUV8 137 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 CCDC32Q9BV29 185 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 GPR174Q9BXC1 333 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 FTHL17Q9BXU8 183 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 ATG10Q9H0Y0 220 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 SRMSQ9H3Y6 488 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 DSN1Q9H410 356 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 CST9LQ9H4G1 147 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 ALG9Q9H6U8 611 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 METTL17Q9H7H0 456 aaPredicted RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 NHEJ1Q9H9Q4 299 aaPredicted RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 ANKHQ9HCJ1 492 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 RNF14Q9UBS8 474 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 NUFIP1Q9UHK0 495 aaKnown RBP2.72□□□□□ -1.97
CD44-217ENST00000525348 B9D1Q9UPM9 204 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 PIGLQ9Y2B2 252 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 SLC35A3Q9Y2D2 325 aa2.72□□□□□ -1.97
CD44-217ENST00000525348 TNRC18O15417 2968 aaPredicted RBP2.71□□□□□ -1.98
CD44-217ENST00000525348 DOT1LQ8TEK3 1739 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 TRAV8-7A0A075B6U6 113 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 MEIKINA0A087WXM9 373 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 IGHV2-70DA0A0C4DH43 119 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 KIR2DL5BA0A0G2JN68 375 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 KIR2DL5BA0A0G2JPC4 375 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 C13orf42A0A1B0GVH6 325 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 OR6C6A6NF89 314 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 ZNF726A6NNF4 738 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 F5H768 121 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 TRAPPC2LH3BP13 241 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 M0R3G1 203 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 GPR31O00270 319 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 ARPC1BO15143 372 aaKnown RBP2.71□□□□□ -1.98
CD44-217ENST00000525348 FGF16O43320 207 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 SLC19A2O60779 497 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 STK16O75716 305 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 S1PR2O95136 353 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 DUSP14O95147 198 aaKnown RBP2.71□□□□□ -1.98
CD44-217ENST00000525348 GJB5O95377 273 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 UTS2O95399 124 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 HPRT1P00492 218 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 CFDP00746 253 aaPredicted RBP2.71□□□□□ -1.98
CD44-217ENST00000525348 PMP2P02689 132 aa2.71□□□□□ -1.98
CD44-217ENST00000525348 BCHEP06276 602 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms