RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 A0A1W2PPH5 198 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 DEGS1O15121 323 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 ZNF737O75373 536 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 CDRT1O95170 752 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 HTR3BO95264 441 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 CD37P11049 281 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 HOXB4P17483 251 aaPredicted RBP11.79□□□□□ -0.52
NUP54-216ENST00000514901 DUSP1P28562 367 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 CEBPDP49716 269 aaPredicted RBP11.79□□□□□ -0.52
NUP54-216ENST00000514901 NHLRC3Q5JS37 347 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 METTL11BQ5VVY1 283 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 C1orf229Q6ZS94 237 aaPredicted RBP11.79□□□□□ -0.52
NUP54-216ENST00000514901 C1orf122Q6ZSJ8 110 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 LINC00596Q86U02 117 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 CMTM4Q8IZR5 234 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 OR8H2Q8N162 312 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 FGFRL1Q8N441 504 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 KIR3DL3Q8N743 410 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 MUL1Q969V5 352 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 UPRTQ96BW1 309 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 NR1H4Q96RI1 486 aaPredicted RBP11.79□□□□□ -0.52
NUP54-216ENST00000514901 METRNQ9UJH8 293 aa11.79□□□□□ -0.52
NUP54-216ENST00000514901 MRPS28Q9Y2Q9 187 aaKnown RBP11.79□□□□□ -0.52
NUP54-216ENST00000514901 A0A1W2PQ09 198 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 FUOMA2VDF0 154 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 OR2H2O95918 312 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 IFNA2P01563 188 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 UBBP0CG47 229 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 CALCBP10092 127 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 GTF2F2P13984 249 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 ADRA2CP18825 462 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 GABRR1P24046 479 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 CALRP27797 417 aaKnown RBP11.78□□□□□ -0.52
NUP54-216ENST00000514901 RPL31P62899 125 aaKnown RBP11.78□□□□□ -0.52
NUP54-216ENST00000514901 NEDD8Q15843 81 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 SLC22A6Q4U2R8 563 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 C1orf100Q5SVJ3 147 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 AWAT2Q6E213 333 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 Q6P435 159 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 GLIPR1L1Q6UWM5 242 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 IL17RELQ6ZVW7 336 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 GDPD3Q7L5L3 318 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 OSR2Q8N2R0 312 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 WDFY2Q96P53 400 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 IL36RNQ9UBH0 155 aa11.78□□□□□ -0.52
NUP54-216ENST00000514901 TRAV1-2A0A0B4J238 106 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 TMEM82A0PJX8 343 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 H3BUI4 141 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 M0R1W7 72 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 PDCD5O14737 125 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 MGST3O14880 152 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 TOX4O94842 621 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 ZNF44P15621 663 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 SERPINA2P20848 420 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 FGF9P31371 208 aaPredicted RBP11.77□□□□□ -0.53
NUP54-216ENST00000514901 SNU13P55769 128 aaKnown RBP11.77□□□□□ -0.53
NUP54-216ENST00000514901 BPIFB3P59826 476 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 ARF6P62330 175 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 MEF2CQ06413 473 aaPredicted RBP11.77□□□□□ -0.53
NUP54-216ENST00000514901 SCN1BQ07699 218 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 BLMHQ13867 455 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 PDCD1Q15116 288 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 GRK1Q15835 563 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 C17orf107Q6ZR85 190 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 OR4D6Q8NGJ1 314 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 OR10K1Q8NGX5 313 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 POM121Q96HA1 1249 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 NKX3-1Q99801 234 aaPredicted RBP11.77□□□□□ -0.53
NUP54-216ENST00000514901 IFT22Q9H7X7 185 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 STUB1Q9UNE7 303 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 SSR3Q9UNL2 185 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 ST3GAL6Q9Y274 331 aa11.77□□□□□ -0.53
NUP54-216ENST00000514901 A0A0G2JK05 382 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 hCG_1809904A0A1W2PP81 198 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 A0A1W2PPE2 198 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 A0A1W2PR64 198 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 A0A1W2PRV1 198 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 SIRPB1O00241 398 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 PSPNO60542 156 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 FSHBP01225 129 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 MMP9P14780 707 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 MYL9P24844 172 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 FPR2P25090 351 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 HTR2CP28335 458 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 ERP29P30040 261 aaKnown RBP11.76□□□□□ -0.53
NUP54-216ENST00000514901 RBM11P57052 281 aaKnown RBP11.76□□□□□ -0.53
NUP54-216ENST00000514901 MPV17LQ2QL34 196 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 FAM185AQ8N0U4 392 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 OR6M1Q8NGM8 313 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 SIRPDQ9H106 197 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 CST11Q9H112 138 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 ONECUT1Q9UBC0 465 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 NUP50Q9UKX7 468 aa11.76□□□□□ -0.53
NUP54-216ENST00000514901 hADV38S2A0JD32 116 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A10PA6NDY2 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A18PA6NE21 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A16PA6NEW6 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A20PA6NIJ5 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A8PA6NJQ4 464 aa11.75□□□□□ -0.53
NUP54-216ENST00000514901 FAM90A7PA6NKC0 464 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms