RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RD3LP0DJH9 198 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CD79AP11912 226 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 AKR1C4P17516 323 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RCC1P18754 421 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 GZMHP20718 246 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CRHBPP24387 322 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CXCR1P25024 350 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RPL4P36578 427 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 ACVR1BP36896 505 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RBM34P42696 430 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 NPBWR2P48146 333 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PPT1P50897 306 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RAB7AP51149 207 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ATP5J2P56134 94 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 GABARAPL2P60520 117 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MAXP61244 160 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TBPL1P62380 186 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 HBA1P69905 142 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PRPSAP1Q14558 356 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PSG5Q15238 335 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RSU1Q15404 277 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TSNQ15631 228 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 MAPK14Q16539 360 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 LRRC26Q2I0M4 334 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SCGB2B2Q4G0G5 96 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TMEM52BQ4KMG9 183 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 FAM74A3Q4VXF1 159 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ACSM3Q53FZ2 586 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OCIAD2Q56VL3 154 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 COL5A1-AS1Q5SY13 56 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 C10orf91Q5T1B1 145 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NCMAPQ5T1S8 102 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 AKR1C8PQ5T2L2 129 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SDHAF4Q5VUM1 108 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TMEM42Q69YG0 159 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 GLYATQ6IB77 296 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RTL6Q6ICC9 239 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF773Q6PK81 442 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 WDR74Q6RFH5 385 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 TMEM205Q6UW68 189 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ASCL4Q6XD76 172 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 H2BFWTQ7Z2G1 175 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OAFQ86UD1 273 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CBWD2Q8IUF1 395 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RIMKLAQ8IXN7 391 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PDZD9Q8IXQ8 264 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CPNE9Q8IYJ1 553 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 GABRG1Q8N1C3 465 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 C2orf73Q8N5S3 287 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 BCORP1Q8N888 145 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 YIPF7Q8N8F6 280 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 UBAC2Q8NBM4 344 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 FBXO36Q8NEA4 188 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR4E2Q8NGC2 313 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR10G3Q8NGC4 313 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR8D4Q8NGM9 314 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SPPL2BQ8TCT7 592 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RNASEH2CQ8TDP1 164 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF431Q8TF32 576 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 SDR42E1Q8WUS8 393 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SKA2Q8WVK7 121 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 DCUN1D4Q92564 292 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ISOC2Q96AB3 205 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 FAM131CQ96AQ9 280 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TMEM159Q96B96 161 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RCN3Q96D15 328 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 FCRL1Q96LA6 429 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 C12orf42Q96LP6 360 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ERMAPQ96PL5 475 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 RBP7Q96R05 134 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR7D2Q96RA2 312 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 IL4I1Q96RQ9 567 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NPAS2Q99743 824 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SLC6A7Q99884 636 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CBWD1Q9BRT8 395 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SNHG12Q9BXW3 62 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RAB34Q9BZG1 259 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ULBP2Q9BZM5 246 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ACTR3CQ9C0K3 210 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 C1orf198Q9H425 327 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 WDR76Q9H967 626 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ANKRA2Q9H9E1 313 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NOX3Q9HBY0 568 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 POLD4Q9HCU8 107 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RAB18Q9NP72 206 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NRN1Q9NPD7 142 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 LHX9Q9NQ69 397 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PXMP2Q9NR77 195 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 LHX3Q9UBR4 397 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RIMS3Q9UJD0 308 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 HHLA2Q9UM44 414 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 UBQLN1Q9UMX0 589 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 SLC35A3Q9Y2D2 325 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CARHSP1Q9Y2V2 147 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 RBM7Q9Y580 266 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 TSSC4Q9Y5U2 329 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 LAMB4A4D0S4 1761 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ANKRD26Q9UPS8 1709 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 WIZO95785 1651 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 KIF1AQ12756 1690 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms