RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 SHISA7A6NL88 538 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 RER1O15258 196 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 PITX3O75364 302 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 CST2P09228 141 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 GALNSP34059 522 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 WNT5AP41221 380 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 IDH3GP51553 393 aaPredicted RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 MRPS11P82912 194 aaKnown RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 PNRC1Q12796 327 aaPredicted RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 MFAP5Q13361 173 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 RSPO4Q2I0M5 234 aaPredicted RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 CNKSR3Q6P9H4 555 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 LCN15Q6UWW0 184 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 CARFQ8N187 725 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 PTPMT1Q8WUK0 201 aaPredicted RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 DIRC2Q96SL1 478 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 PLEKHF2Q9H8W4 249 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 RRP8O43159 456 aaKnown RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 RPLP1P05386 114 aaKnown RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 METTL15P1P0C7V9 234 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 FCGR2AP12318 317 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 NKX2-1P43699 371 aaPredicted RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 HNRNPKP61978 463 aaKnown RBP eCLIP10.18□□□□□ -0.782e-6■■■■□ 19.5
HDAC4-210ENST00000493582 ARL6IP1Q15041 203 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 ADIRFQ15847 76 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 ARSJQ5FYB0 599 aaPredicted RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 C20orf196Q8IYI0 205 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 TMEM18Q96B42 140 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 NKX2-4Q9H2Z4 354 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 LANCL2Q9NS86 450 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 FUT9Q9Y231 359 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 POLR3KQ9Y2Y1 108 aaPredicted RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 MRPS18CQ9Y3D5 142 aaKnown RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 LHFPL6Q9Y693 200 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 MUC22E2RYF6 1773 aaPredicted RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 TMEM50AO95807 157 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 IL12BP29460 328 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 BIDP55957 195 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 VAMP2P63027 116 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 ZNF154Q13106 437 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 TRA2AQ13595 282 aaKnown RBP eCLIP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 COA6Q5JTJ3 125 aaKnown RBP10.18□□□□□ -0.78
HDAC4-210ENST00000493582 RTL6Q6ICC9 239 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 ODF3L1Q8IXM7 274 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 LRTM2Q8N967 370 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 PIGTQ969N2 578 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 PCGF1Q9BSM1 259 aa10.18□□□□□ -0.78
HDAC4-210ENST00000493582 CPAMD8Q8IZJ3 1885 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 ZNF732B4DXR9 585 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 HLA-HP01893 362 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 PFN1P07737 140 aaKnown RBP10.17□□□□□ -0.78
HDAC4-210ENST00000493582 IRF2P14316 349 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 CD33P20138 364 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 C1orf194Q5T5A4 169 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 C16orf82Q7Z2V1 217 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 OR5L2Q8NGL0 311 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 SSC4DQ8WTU2 575 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 GPHA2Q96T91 129 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 ELOVL1Q9BW60 279 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 C11orf1Q9H5F2 150 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 TMEM210A6NLX4 147 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 PPP5D1E7EU14 171 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 ETV2O00321 342 aaPredicted RBP10.17□□□□□ -0.78
HDAC4-210ENST00000493582 HBE1P02100 147 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 BATFQ16520 125 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 ARMC6Q6NXE6 501 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 FAM180AQ6UWF9 173 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 DTX1Q86Y01 620 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 PRSS58Q8IYP2 241 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 ZNF283Q8N7M2 679 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 MRPL43Q8N983 215 aaKnown RBP10.17□□□□□ -0.78
HDAC4-210ENST00000493582 GNPNAT1Q96EK6 184 aaPredicted RBP10.17□□□□□ -0.78
HDAC4-210ENST00000493582 FKBP11Q9NYL4 201 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 V9GYS6 101 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 KIAA2026Q5HYC2 2103 aa10.17□□□□□ -0.78
HDAC4-210ENST00000493582 A0A1W2PPQ1 181 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 SEMA4FO95754 770 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 CTHP32929 405 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 OR1D4P47884 311 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 TLE3Q04726 772 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 OOSP2Q86WS3 158 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 IL22RA1Q8N6P7 574 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 C12orf76Q8N812 135 aaPredicted RBP10.16□□□□□ -0.78
HDAC4-210ENST00000493582 TSLPQ969D9 159 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 LYRM2Q9NU23 88 aaPredicted RBP10.16□□□□□ -0.78
HDAC4-210ENST00000493582 NECAP2Q9NVZ3 263 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 P4HTMQ9NXG6 502 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 COL4A2P08572 1712 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 MED12Q93074 2177 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 CNOT4O95628 575 aaKnown RBP10.16□□□□□ -0.78
HDAC4-210ENST00000493582 ADH1BP00325 375 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 BCL2P10415 239 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 SELEP16581 610 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 DAP3P51398 398 aaKnown RBP10.16□□□□□ -0.78
HDAC4-210ENST00000493582 DCAF7P61962 342 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 RTP5Q14D33 572 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 C9orf40Q8IXQ3 194 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 VSIRQ9H7M9 311 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 RPRMQ9NS64 109 aa10.16□□□□□ -0.78
HDAC4-210ENST00000493582 TBX21Q9UL17 535 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms