RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 TMEM203Q969S6 136 aa13.4□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 S100A13Q99584 98 aa13.4□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 SLC6A7Q99884 636 aa13.4□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 SUCNR1Q9BXA5 334 aa13.4□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 MS4A7Q9GZW8 240 aaPredicted RBP13.4□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 TCF7L1Q9HCS4 588 aa13.4□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 IL36GQ9NZH8 169 aa13.4□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 ING4Q9UNL4 249 aa13.4□□□□□ -0.26
MSH5-SAPCD1-206ENST00000491552 PSPNO60542 156 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 RGS9O75916 674 aaPredicted RBP13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CDRT1O95170 752 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 HTR3BO95264 441 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 ZNF44P15621 663 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 GABRA5P31644 462 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 BLMHQ13867 455 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 GRK1Q15835 563 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 HSD17B12Q53GQ0 312 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SPARTQ8N0X7 666 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 Q8N7P7 452 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 Q8NFD4 153 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PPP1R35Q8TAP8 253 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 TBC1D15Q8TC07 691 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 LHX4Q969G2 390 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 MUL1Q969V5 352 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CHST6Q9GZX3 395 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SF3B6Q9Y3B4 125 aaKnown RBP13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 LRRC42Q9Y546 428 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CUBNO60494 3623 aa13.39□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 A0A0A6YYJ9 748 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 A0A1W2PPH5 198 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 MEGF11A6BM72 1044 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CSTBP04080 98 aaKnown RBP13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 UCHL1P09936 223 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 LMO1P25800 156 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 OR3A1P47881 315 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 GP2P55259 537 aaKnown RBP13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 EDDM3BP56851 147 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 BPIFB3P59826 476 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SCN1BQ07699 218 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 EDDM3AQ14507 147 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 IL13RA2Q14627 380 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 UBE2UQ5VVX9 321 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 TMEM200BQ69YZ2 307 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 Q6P435 159 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 ZNF773Q6PK81 442 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 TMEM91Q6ZNR0 172 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 C1orf122Q6ZSJ8 110 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 C9orf139Q6ZV77 190 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 BCL6BQ8N143 479 aaPredicted RBP13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CHST4Q8NCG5 386 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 OR4S1Q8NGB4 309 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 OR51T1Q8NGJ9 327 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PHYHIPQ92561 330 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 FCGR1BQ92637 280 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 NR1H4Q96RI1 486 aaPredicted RBP13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SIRT7Q9NRC8 400 aa13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 MRPS28Q9Y2Q9 187 aaKnown RBP13.38□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CENPVL3A0A0U1RRI6 287 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 MGST3O14880 152 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 DEGS1O15121 323 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 ZNF780AO75290 641 aaPredicted RBP13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SERPINA2P20848 420 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 ZNF273Q14593 569 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SSX1Q16384 188 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PIGYQ3MUY2 71 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 KCTD21Q4G0X4 260 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 AWAT2Q6E213 333 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 METAP1DQ6UB28 335 aaPredicted RBP13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 BRD3OSQ6XYD6 125 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 USP43Q70EL4 1123 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 LRRTM1Q86UE6 522 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 LYPD6Q86Y78 171 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 OSR2Q8N2R0 312 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 UQCC2Q9BRT2 126 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SLITRK2Q9H156 845 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PPIL3Q9H2H8 161 aaKnown RBP13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 METTL8Q9H825 291 aaKnown RBP13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PCDHB16Q9NRJ7 776 aa13.37□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 IGHV1-69DA0A0B4J2H0 117 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 A0A0G2JK05 382 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SLC33A1O00400 549 aaPredicted RBP13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 ARL6IP5O75915 188 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 IGHV1-69P01742 117 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SRMP19623 302 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PSMB9P28065 219 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 RBM11P57052 281 aaKnown RBP13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 FABP5Q01469 135 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 MEF2CQ06413 473 aaPredicted RBP13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 GPR176Q14439 515 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 TUSC1Q2TAM9 212 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SLC22A6Q4U2R8 563 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 NHLRC3Q5JS37 347 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 RUSC1-AS1Q66K80 236 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 GLT8D1Q68CQ7 371 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 GLIPR1L1Q6UWM5 242 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 OR4D6Q8NGJ1 314 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 FOXRED1Q96CU9 486 aaPredicted RBP13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PPA2Q9H2U2 334 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 UNKLQ9H9P5 680 aaKnown RBP13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 NDUFB11Q9NX14 153 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms