RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 OR3A4PP47883 348 aa16.42■□□□□ 0.22
CCM2-216ENST00000488727 PPOXP50336 477 aa16.42■□□□□ 0.22
CCM2-216ENST00000488727 OR8B8Q15620 311 aa16.42■□□□□ 0.22
CCM2-216ENST00000488727 ZBTB37Q5TC79 503 aa16.42■□□□□ 0.22
CCM2-216ENST00000488727 RNF144BQ7Z419 303 aa16.42■□□□□ 0.22
CCM2-216ENST00000488727 BPIFB2Q8N4F0 458 aa16.42■□□□□ 0.22
CCM2-216ENST00000488727 CHST4Q8NCG5 386 aa16.42■□□□□ 0.22
CCM2-216ENST00000488727 OR2AK2Q8NG84 335 aa16.42■□□□□ 0.22
CCM2-216ENST00000488727 ZNF391Q9UJN7 358 aa16.42■□□□□ 0.22
CCM2-216ENST00000488727 CHD3Q12873 2000 aaKnown RBP16.41■□□□□ 0.22
CCM2-216ENST00000488727 H3BUI4 141 aa16.41■□□□□ 0.22
CCM2-216ENST00000488727 NDUFS7O75251 213 aa16.41■□□□□ 0.22
CCM2-216ENST00000488727 MUC20Q8N307 709 aaPredicted RBP16.41■□□□□ 0.22
CCM2-216ENST00000488727 OR8G5Q8NG78 346 aa16.41■□□□□ 0.22
CCM2-216ENST00000488727 NINJ1Q92982 152 aa16.41■□□□□ 0.22
CCM2-216ENST00000488727 PRRT1Q99946 306 aa16.41■□□□□ 0.22
CCM2-216ENST00000488727 CHST5Q9GZS9 411 aa16.41■□□□□ 0.22
CCM2-216ENST00000488727 EDARQ9UNE0 448 aa16.41■□□□□ 0.22
CCM2-216ENST00000488727 NOTCH2Q04721 2471 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 A0A0A6YYD4 124 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 PLSCR5A0PG75 271 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 ANKRD34BA5PLL1 514 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 DHRS7CA6NNS2 312 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 MTRF1O75570 445 aaKnown RBP16.4■□□□□ 0.22
CCM2-216ENST00000488727 RGS11O94810 467 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 SELEP16581 610 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 RNASE10Q5GAN6 216 aaKnown RBP16.4■□□□□ 0.22
CCM2-216ENST00000488727 TEX261Q6UWH6 196 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 FTMTQ8N4E7 242 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 PNLDC1Q8NA58 520 aaKnown RBP16.4■□□□□ 0.22
CCM2-216ENST00000488727 UXS1Q8NBZ7 420 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 OR13C8Q8NGS7 320 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 SPACA5Q96QH8 159 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 SLC6A7Q99884 636 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 VRK1Q99986 396 aaPredicted RBP16.4■□□□□ 0.22
CCM2-216ENST00000488727 TMEM59Q9BXS4 323 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 CHIAQ9BZP6 476 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 MS4A5Q9H3V2 200 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 ZNF701Q9NV72 531 aaPredicted RBP16.4■□□□□ 0.22
CCM2-216ENST00000488727 U3KQ87 197 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 ARID1AO14497 2285 aa16.4■□□□□ 0.22
CCM2-216ENST00000488727 C17orf100A8MU93 164 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 FCER2P06734 321 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 ZNF81P51508 661 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 TSPAN5P62079 268 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 PNLIPRP3Q17RR3 467 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 ATPAF1Q5TC12 328 aaPredicted RBP16.39■□□□□ 0.21
CCM2-216ENST00000488727 CRIP3Q6Q6R5 217 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 GPR160Q9UJ42 338 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 SSX5O60225 188 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 TSC22D2O75157 780 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 MPIG6BO95866 241 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 IGHV1-46P01743 117 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 OR4E1P0C645 316 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 GNB3P16520 340 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 NAT1P18440 290 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 C4BPBP20851 252 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 DEFB113Q30KQ7 82 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 ZDHHC22Q8N966 263 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 TMEM104Q8NE00 496 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 OR8H1Q8NGG4 311 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 OR56B1Q8NGI3 324 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 NUDCD2Q8WVJ2 157 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 MBD6Q96DN6 1003 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 GPER1Q99527 375 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 NICN1Q9BSH3 213 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 URM1Q9BTM9 101 aaKnown RBP16.39■□□□□ 0.21
CCM2-216ENST00000488727 SELENOIQ9C0D9 397 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 CHST6Q9GZX3 395 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 IFT46Q9NQC8 304 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.39■□□□□ 0.211e-6■■■■□ 24.6
CCM2-216ENST00000488727 OPN4Q9UHM6 478 aa16.39■□□□□ 0.21
CCM2-216ENST00000488727 FBXO9Q9UK97 447 aaPredicted RBP16.39■□□□□ 0.21
CCM2-216ENST00000488727 MLNRO43193 412 aa16.38■□□□□ 0.21
CCM2-216ENST00000488727 PAX1P15863 534 aa16.38■□□□□ 0.21
CCM2-216ENST00000488727 HIST1H1DP16402 221 aaKnown RBP16.38■□□□□ 0.21
CCM2-216ENST00000488727 KISS1Q15726 138 aa16.38■□□□□ 0.21
CCM2-216ENST00000488727 C4orf46Q504U0 113 aa16.38■□□□□ 0.21
CCM2-216ENST00000488727 FAM89BQ8N5H3 189 aa16.38■□□□□ 0.21
CCM2-216ENST00000488727 TNFAIP8L1Q8WVP5 186 aa16.38■□□□□ 0.21
CCM2-216ENST00000488727 CST11Q9H112 138 aa16.38■□□□□ 0.21
CCM2-216ENST00000488727 BEX4Q9NWD9 120 aaPredicted RBP16.38■□□□□ 0.21
CCM2-216ENST00000488727 A0A1B0GWJ7 208 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 F5H5P2 479 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 H0YL77 283 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 SPRY3O43610 288 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 GNG2P59768 71 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 RPS27AP62979 156 aaKnown RBP16.37■□□□□ 0.21
CCM2-216ENST00000488727 ZNF680Q8NEM1 530 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 OR4S1Q8NGB4 309 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 OR10AD1Q8NGE0 317 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 RAB3CQ96E17 227 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 PERPQ96FX8 193 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 GSX2Q9BZM3 304 aa16.37■□□□□ 0.21
CCM2-216ENST00000488727 FOXI3A8MTJ6 420 aaPredicted RBP16.36■□□□□ 0.21
CCM2-216ENST00000488727 MFNGO00587 321 aa16.36■□□□□ 0.21
CCM2-216ENST00000488727 LY6HO94772 140 aa16.36■□□□□ 0.21
CCM2-216ENST00000488727 IGHV4-39P01824 125 aa16.36■□□□□ 0.21
CCM2-216ENST00000488727 ADH4P08319 380 aa16.36■□□□□ 0.21
CCM2-216ENST00000488727 FAHP16930 419 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms