RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 IL13RA1P78552 427 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 MALLQ13021 153 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 PLCXD3Q63HM9 321 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 C11orf87Q6NUJ2 197 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 MRPL21Q7Z2W9 205 aaKnown RBP10.43□□□□□ -0.74
HDAC6-230ENST00000488543 LYG2Q86SG7 212 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 CCDC36Q8IYA8 594 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 LHFPL5Q8TAF8 219 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 SLC25A21Q9BQT8 299 aaPredicted RBP10.43□□□□□ -0.74
HDAC6-230ENST00000488543 TAS2R3Q9NYW6 316 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 ZNF850A8MQ14 1090 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 DISC1C4P0D8 188 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 SPRY1O43609 319 aaPredicted RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 ANGPTL7O43827 346 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 AGFG2O95081 481 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 SERPINA2P20848 420 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 RBP2P50120 134 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 NPY4RP50391 375 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 FUT6P51993 359 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 UBE2NP61088 152 aaKnown RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 C1orf162Q8NEQ5 155 aaPredicted RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 TMEM185AQ8NFB2 350 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 BORCS8Q96FH0 119 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 URM1Q9BTM9 101 aaKnown RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 ALX4Q9H161 411 aaPredicted RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 BARX1Q9HBU1 254 aaPredicted RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 RASL12Q9NYN1 266 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 COMMD9Q9P000 198 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 IGKV1-12A0A0C4DH73 117 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 C5orf51A6NDU8 294 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 KRBOX1C9JBD0 128 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 MFNGO00587 321 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 IGKV1D-12P01611 117 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 CD8AP01732 235 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 TMEM225BP0DP42 221 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 HOXB1P14653 301 aaPredicted RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 RAC2P15153 192 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 HIST1H1DP16402 221 aaKnown RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 MRPL49Q13405 166 aaKnown RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 SLC9A3R2Q15599 337 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 SLC25A42Q86VD7 318 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 TMEM200AQ86VY9 491 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 KCNRGQ8N5I3 272 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 OR56B1Q8NGI3 324 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 RAB3CQ96E17 227 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 LRRC46Q96FV0 321 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 TECTBQ96PL2 329 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 MED9Q9NWA0 146 aa10.42□□□□□ -0.74
HDAC6-230ENST00000488543 ZNF107Q9UII5 783 aaPredicted RBP10.42□□□□□ -0.74
HDAC6-230ENST00000488543 F5H0A9 414 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 ADAP1O75689 374 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 CST4P01036 141 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 CRHP06850 196 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 GSTP1P09211 210 aaKnown RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 IDH3GP51553 393 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 UBA52P62987 128 aaKnown RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 RBPJQ06330 500 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 PRDX4Q13162 271 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 TBC1D28Q2M2D7 210 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 HSD17B13Q7Z5P4 300 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 OR51T1Q8NGJ9 327 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 OR1S2Q8NGQ3 325 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 HPSE2Q8WWQ2 592 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 ARHGAP5-AS1Q96IT6 56 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 Q96M66 194 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 OR51B6Q9H340 312 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 OPA3Q9H6K4 179 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 ANAPC10Q9UM13 185 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 SLC7A11Q9UPY5 501 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 OSGIN2Q9Y236 505 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 COL12A1Q99715 3063 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 PQLC2LA1A4F0 135 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 CD300LBA8K4G0 201 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 SDCBPO00560 298 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 BCL2L11O43521 198 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 LILRA1O75019 489 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 HTR3BO95264 441 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 F12P00748 615 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 SFTPCP11686 197 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 SERPINF1P36955 418 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 FAM27E3Q08E93 113 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 FAM189A2Q15884 450 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 MICBQ29980 383 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 C22orf34Q6ZV56 151 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 THNSL2Q86YJ6 484 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 LILRB1Q8NHL6 650 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 RRNAD1Q96FB5 475 aaKnown RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 CPNE2Q96FN4 548 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 PAPOLGQ9BWT3 736 aaKnown RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 METTL9Q9H1A3 318 aa10.41□□□□□ -0.74
HDAC6-230ENST00000488543 ELL3Q9HB65 397 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 ZNF629Q9UEG4 869 aaPredicted RBP10.41□□□□□ -0.74
HDAC6-230ENST00000488543 DIDO1Q9BTC0 2240 aaKnown RBP10.4□□□□□ -0.74
HDAC6-230ENST00000488543 A0A0B4J2A0 478 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 DNASE2O00115 360 aaPredicted RBP10.4□□□□□ -0.74
HDAC6-230ENST00000488543 PGAM2P15259 253 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 CBR1P16152 277 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 SRSF3P84103 164 aaKnown RBP10.4□□□□□ -0.74
HDAC6-230ENST00000488543 PDZK1IP1Q13113 114 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms