RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PKDREJQ9NTG1 2253 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 ICE1Q9Y2F5 2266 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 A1L4Q6 167 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 IGHV3-13P01766 116 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 CD3EP07766 207 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 ACAA1P09110 424 aaPredicted RBP12.03□□□□□ -0.48
CUX1-209ENST00000487284 AMY2BP19961 511 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 DTYMKP23919 212 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 TAS2R46P59540 309 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 IL13RA2Q14627 380 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 NKPD1Q17RQ9 610 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 METTL11BQ5VVY1 283 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 VHLLQ6RSH7 139 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 GLDNQ6ZMI3 551 aaPredicted RBP12.03□□□□□ -0.48
CUX1-209ENST00000487284 SLC36A1Q7Z2H8 476 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 BATF2Q8N1L9 274 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 SPERTQ8NA61 448 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 OR13C8Q8NGS7 320 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 FAM222BQ8WU58 562 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 PIK3IP1Q96FE7 263 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 CMSS1Q9BQ75 279 aaKnown RBP12.03□□□□□ -0.48
CUX1-209ENST00000487284 CHST6Q9GZX3 395 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 CXXC4Q9H2H0 198 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 FZR1Q9UM11 496 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 RNF115Q9Y4L5 304 aa12.03□□□□□ -0.48
CUX1-209ENST00000487284 DCHS2Q6V1P9 2916 aa12.02□□□□□ -0.48
CUX1-209ENST00000487284 SHISA9B4DS77 424 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 H3BUI4 141 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 RHBDL1O75783 438 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 OR7C1O76099 320 aaPredicted RBP12.02□□□□□ -0.49
CUX1-209ENST00000487284 CLDN1O95832 211 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 PLAUP00749 431 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 PRKACAP17612 351 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 ANXA7P20073 488 aaKnown RBP12.02□□□□□ -0.49
CUX1-209ENST00000487284 SNU13P55769 128 aaKnown RBP12.02□□□□□ -0.49
CUX1-209ENST00000487284 ERVK11-1P61568 191 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 RPS23P62266 143 aaKnown RBP12.02□□□□□ -0.49
CUX1-209ENST00000487284 ATAD3CQ5T2N8 411 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 CD276Q5ZPR3 534 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 Q8IYB0 196 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 FAM58AQ8N1B3 248 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 ARRDC1Q8N5I2 433 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 NUP37Q8NFH4 326 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 OR13G1Q8NGZ3 307 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 TMEM171Q8WVE6 324 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 NEUROG1Q92886 237 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 ZNF488Q96MN9 340 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 HDHD3Q9BSH5 251 aaPredicted RBP12.02□□□□□ -0.49
CUX1-209ENST00000487284 BEX2Q9BXY8 128 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 TLNRD1Q9H1K6 362 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 MED28Q9H204 178 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 BEX1Q9HBH7 125 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 MYOZ1Q9NP98 299 aaPredicted RBP12.02□□□□□ -0.49
CUX1-209ENST00000487284 CA10Q9NS85 328 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 IL36RNQ9UBH0 155 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 ZNF230Q9UIE0 474 aaPredicted RBP12.02□□□□□ -0.49
CUX1-209ENST00000487284 ZNF221Q9UK13 617 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 EDARQ9UNE0 448 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 ATP23Q9Y6H3 246 aa12.02□□□□□ -0.49
CUX1-209ENST00000487284 IGLV3-9A0A075B6K5 115 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 PMP2P02689 132 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 HPXP02790 462 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 CSN2P05814 226 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 FCGR3AP08637 254 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 PGA5P0DJD9 388 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 VSIG10L2P0DP72 767 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 CBX3Q13185 183 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 SCGB2B2Q4G0G5 96 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 OR5H2Q8NGV7 314 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 MRGPRFQ96AM1 343 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 NRIP2Q9BQI9 281 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 ST6GALNAC5Q9BVH7 336 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 ALX4Q9H161 411 aaPredicted RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 IFT22Q9H7X7 185 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 ZNF701Q9NV72 531 aaPredicted RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 TMEM82A0PJX8 343 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 A8MV72 311 aaPredicted RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 SNRPGP15A8MWD9 76 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 F5H5P2 479 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 NOS1APO75052 506 aaPredicted RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 RLN1P04808 185 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 IFNA6P05013 189 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 EIF2B2P49770 351 aaKnown RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 KLF3P57682 345 aaPredicted RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 MRPS15P82914 257 aaKnown RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 PDCD1Q15116 288 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 FCN2Q15485 313 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 ATPAF1Q5TC12 328 aaPredicted RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 LRP11Q86VZ4 500 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 ZDHHC22Q8N966 263 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 OR5AP2Q8NGF4 316 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 SEC22CQ9BRL7 303 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 TMEM204Q9BSN7 226 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 SPACA1Q9HBV2 294 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 MSL2Q9HCI7 577 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 GPN1Q9HCN4 374 aaPredicted RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 RANGRFQ9HD47 186 aaPredicted RBP12.01□□□□□ -0.49
CUX1-209ENST00000487284 C12orf4Q9NQ89 552 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 LRBAP50851 2863 aa12.01□□□□□ -0.49
CUX1-209ENST00000487284 DOPEY2Q9Y3R5 2298 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms