RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 GPR4P46093 362 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 CARD18P57730 90 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 TAS2R60P59551 318 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 ENDOGQ14249 297 aaKnown RBP0.75□□□□□ -2.29
VPS50-216ENST00000484954 GUSBP1Q15486 140 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 CAVIN4Q5BKX8 364 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 ACTL10Q5JWF8 245 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 IDNKQ5T6J7 187 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 SYT6Q5T7P8 510 aaPredicted RBP0.75□□□□□ -2.29
VPS50-216ENST00000484954 TMEM215Q68D42 235 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 ZNF322Q6U7Q0 402 aaPredicted RBP0.75□□□□□ -2.29
VPS50-216ENST00000484954 MARCH3Q86UD3 253 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 NELFCDQ8IXH7 590 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 CPNE9Q8IYJ1 553 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 FAM184AQ8NB25 1140 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 OR2M3Q8NG83 312 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 SMIM8Q96KF7 97 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 RILPQ96NA2 401 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 BIRC8Q96P09 236 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 METTL26Q96S19 204 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 UTP23Q9BRU9 249 aaKnown RBP0.75□□□□□ -2.29
VPS50-216ENST00000484954 TM6SF2Q9BZW4 377 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 SLC38A1Q9H2H9 487 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 TXNIPQ9H3M7 391 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 GAL3ST2Q9H3Q3 398 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 POMKQ9H5K3 350 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 C6orf50Q9HD87 102 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 ACOT13Q9NPJ3 140 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 C12orf4Q9NQ89 552 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 RMND1Q9NWS8 449 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 TAC3Q9UHF0 121 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 ANXA10Q9UJ72 324 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 FLVCR2Q9UPI3 526 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 CFL2Q9Y281 166 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 AP3M1Q9Y2T2 418 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 INSIG2Q9Y5U4 225 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 ICOSQ9Y6W8 199 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 V9GYY9 64 aa0.75□□□□□ -2.29
VPS50-216ENST00000484954 BRCA1P38398 1863 aaKnown RBP0.75□□□□□ -2.29
VPS50-216ENST00000484954 RP1L1Q8IWN7 2480 aaPredicted RBP0.74□□□□□ -2.29
VPS50-216ENST00000484954 A0A1B0GU33 70 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 GSTTP1A0A1W2PQM5 241 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 GMNCA6NCL1 334 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 RBFOX3A6NFN3 312 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 H3BMM0 161 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 GATCO43716 136 aaKnown RBP0.74□□□□□ -2.29
VPS50-216ENST00000484954 SC5DO75845 299 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 CSTAP01040 98 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 IGKV1D-33P01593 117 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 IGKV1-33P01594 117 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 RLN2P04090 185 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 CECR9P0C854 216 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 STAG3L2P0CL84 134 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 XIAPP98170 497 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 DHRS2Q13268 280 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 SSX1Q16384 188 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 CLEC12AQ5QGZ9 265 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 GLYATQ6IB77 296 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 FAHD1Q6P587 224 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 PID1Q7Z2X4 250 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 DPPA2Q7Z7J5 298 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 GALNT10Q86SR1 603 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 COMTD1Q86VU5 262 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 CYP4Z2PQ8N1L4 340 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 RPRMLQ8N4K4 120 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 ATPAF2Q8N5M1 289 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 Q8NAQ8 132 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 MAL2Q969L2 176 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 UBE2WQ96B02 151 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 FMC1Q96HJ9 113 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 CPB2Q96IY4 423 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 ZNF436Q9C0F3 470 aaPredicted RBP0.74□□□□□ -2.29
VPS50-216ENST00000484954 ANKHQ9HCJ1 492 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 TRAPPC1Q9Y5R8 145 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 U3KQK5 164 aa0.74□□□□□ -2.29
VPS50-216ENST00000484954 IGKV1D-37A0A075B6S9 117 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 F5H5P2 479 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 CDK1P06493 297 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 PTHLHP12272 177 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 HOXB8P17481 243 aaPredicted RBP0.73□□□□□ -2.29
VPS50-216ENST00000484954 TAC1P20366 129 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 BGNP21810 368 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 CNTFRP26992 372 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 IMPA1P29218 277 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 HTR2BP41595 481 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 NUDT2P50583 147 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 C2orf80Q0P641 193 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 TNXAQ16473 311 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 THOC7Q6I9Y2 204 aaKnown RBP0.73□□□□□ -2.29
VPS50-216ENST00000484954 LAIR2Q6ISS4 152 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 ERICH5Q6P6B1 374 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 ZNF773Q6PK81 442 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 LINC00596Q86U02 117 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 AMN1Q8IY45 258 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 FAM58AQ8N1B3 248 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 ZIC4Q8N9L1 334 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 OR8A1Q8NGG7 326 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 OR52K1Q8NGK4 314 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 OR4K13Q8NH42 304 aa0.73□□□□□ -2.29
VPS50-216ENST00000484954 OR51Q1Q8NH59 317 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms