RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 NICN1Q9BSH3 213 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 SLIRPQ9GZT3 109 aaKnown RBP10.21□□□□□ -0.77
SDC1-206ENST00000482879 DNTTIP1Q9H147 329 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 ATG5Q9H1Y0 275 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 PATZ1Q9HBE1 687 aaKnown RBP10.21□□□□□ -0.77
SDC1-206ENST00000482879 RHBDL2Q9NX52 303 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 ZNF581Q9P0T4 197 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 KAAG1Q9UBP8 84 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 MIOXQ9UGB7 285 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 METRNQ9UJH8 293 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 CSMD2Q7Z408 3487 aa10.21□□□□□ -0.78
SDC1-206ENST00000482879 A0A075B6Q4 140 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 A0A0A6YYD4 124 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 IGHV4-61A0A0C4DH41 118 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 A0A1B0GW55 424 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A10PA6NDY2 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A18PA6NE21 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A16PA6NEW6 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A20PA6NIJ5 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A8PA6NJQ4 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A7PA6NKC0 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A22PA8MWA6 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A12PA8MX19 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A5PA8MXJ8 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A23PA8MXZ1 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 SIGLEC5O15389 551 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 HPGDSO60760 199 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 WNT2P09544 360 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A15PP0C7V4 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A13PP0C7W8 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A14PP0C7W9 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM90A24PP0C7X0 464 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 DUX4L2P0CJ85 424 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 DUX4L3P0CJ86 424 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 DUX4L4P0CJ87 422 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 DUX4L5P0CJ88 424 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 DUX4L6P0CJ89 424 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 DUX4L7P0CJ90 424 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 RPS2P15880 293 aaKnown RBP10.2□□□□□ -0.78
SDC1-206ENST00000482879 CR1P17927 2039 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 BLVRBP30043 206 aaPredicted RBP10.2□□□□□ -0.78
SDC1-206ENST00000482879 IL13RA1P78552 427 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 UBE2NLQ5JXB2 153 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 ATAD3CQ5T2N8 411 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 DUX4L9Q6RFH8 374 aaPredicted RBP10.2□□□□□ -0.78
SDC1-206ENST00000482879 CMTM4Q8IZR5 234 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 ZNF561Q8N587 486 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM89BQ8N5H3 189 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 FAM216BQ8N7L0 139 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 ASCC1Q8N9N2 400 aaKnown RBP10.2□□□□□ -0.78
SDC1-206ENST00000482879 CHST4Q8NCG5 386 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 OR8B3Q8NGG8 313 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 OR56B1Q8NGI3 324 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 CLDND2Q8NHS1 167 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 DSCAML1Q8TD84 2053 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 SLC25A38Q96DW6 304 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 NEIL1Q96FI4 390 aaPredicted RBP10.2□□□□□ -0.78
SDC1-206ENST00000482879 SNX22Q96L94 193 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 NEDD4LQ96PU5 975 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 OR8B2Q96RD0 313 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 C6orf62Q9GZU0 229 aaPredicted RBP10.2□□□□□ -0.78
SDC1-206ENST00000482879 DUX4Q9UBX2 424 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 MAB21L2Q9Y586 359 aa10.2□□□□□ -0.78
SDC1-206ENST00000482879 TRAV24A0A0B4J272 114 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 TMEM82A0PJX8 343 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 H3BUI4 141 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 SLC33A1O00400 549 aaPredicted RBP10.19□□□□□ -0.78
SDC1-206ENST00000482879 CTDSP2O14595 271 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 SOCS1O15524 211 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 RGS5O15539 181 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 NDUFB3O43676 98 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 PDCD6O75340 191 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 SELLP14151 372 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 FUT3P21217 361 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 USF1P22415 310 aaPredicted RBP10.19□□□□□ -0.78
SDC1-206ENST00000482879 LMO1P25800 156 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 LMO4P61968 165 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 PAN3Q58A45 887 aaKnown RBP10.19□□□□□ -0.78
SDC1-206ENST00000482879 NKAPLQ5M9Q1 402 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 SIGIRRQ6IA17 410 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 NLRC3Q7RTR2 1065 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 BIVMQ86UB2 503 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 SUMF2Q8NBJ7 301 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 ZNRF1Q8ND25 227 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 WFDC11Q8NEX6 87 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 TMEM185AQ8NFB2 350 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 RAB40AQ8WXH6 277 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 PHF21AQ96BD5 680 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 RAB39BQ96DA2 213 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 S100A16Q96FQ6 103 aaKnown RBP10.19□□□□□ -0.78
SDC1-206ENST00000482879 CMTM3Q96MX0 182 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 REG4Q9BYZ8 158 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 NXF2Q9GZY0 626 aaKnown RBP10.19□□□□□ -0.78
SDC1-206ENST00000482879 ABCG5Q9H222 651 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 IFT22Q9H7X7 185 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 SPACA1Q9HBV2 294 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 CTSZQ9UBR2 303 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 PEX16Q9Y5Y5 336 aa10.19□□□□□ -0.78
SDC1-206ENST00000482879 SETXQ7Z333 2677 aaKnown RBP10.19□□□□□ -0.78
SDC1-206ENST00000482879 FAM25AB3EWG3 89 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms