RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 CAPZA1P52907 286 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 ERVFRD-1P60508 538 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 RPS25P62851 125 aaKnown RBP7.98□□□□□ -1.13
HDAC3-208ENST00000476739 PPP3R1P63098 170 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 EMX1Q04741 257 aaPredicted RBP7.98□□□□□ -1.13
HDAC3-208ENST00000476739 KRTAP21-3Q3LHN1 58 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 KCTD21Q4G0X4 260 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 ACSM3Q53FZ2 586 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 ARMCX4Q5H9R4 360 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 RUSC1-AS1Q66K80 236 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 UNQ9370/PRO34162Q6UXP9 181 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 C17orf107Q6ZR85 190 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 CENPSQ8N2Z9 138 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 ZNF561Q8N587 486 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 Q8N7P7 452 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 PNLDC1Q8NA58 520 aaKnown RBP7.98□□□□□ -1.13
HDAC3-208ENST00000476739 OR10K1Q8NGX5 313 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 C8orf46Q8TAG6 207 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 TNFAIP8L1Q8WVP5 186 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 S100ZQ8WXG8 99 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 TMEM203Q969S6 136 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 WDFY2Q96P53 400 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 SLC6A7Q99884 636 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 HMG20AQ9NP66 347 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 TMEM138Q9NPI0 162 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 ONECUT1Q9UBC0 465 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 NUP50Q9UKX7 468 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 GSTK1Q9Y2Q3 226 aa7.98□□□□□ -1.13
HDAC3-208ENST00000476739 SF3B6Q9Y3B4 125 aaKnown RBP7.98□□□□□ -1.13
HDAC3-208ENST00000476739 CENPVL3A0A0U1RRI6 287 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 A0A1W2PP11 408 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 SIRPB1O00241 398 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 GPR37O15354 613 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 MAGEB3O15480 346 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 SC5DO75845 299 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 CYB5AP00167 134 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 IFNA2P01563 188 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 LIPFP07098 398 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 CHRM2P08172 466 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 S100A5P33763 92 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 GABARAPL2P60520 117 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 TPBGQ13641 420 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 ZNF273Q14593 569 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 ZNF146Q15072 292 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 TBCEQ15813 527 aaPredicted RBP7.97□□□□□ -1.13
HDAC3-208ENST00000476739 TUSC1Q2TAM9 212 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 TRIM16LQ309B1 348 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 METTL11BQ5VVY1 283 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 Q6P435 159 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 METAP1DQ6UB28 335 aaPredicted RBP7.97□□□□□ -1.13
HDAC3-208ENST00000476739 ASCL4Q6XD76 172 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 BRD3OSQ6XYD6 125 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 TMEM91Q6ZNR0 172 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 LYPD6Q86Y78 171 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 PHC2Q8IXK0 858 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 PDZD9Q8IXQ8 264 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 Q8IYB0 196 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 SAXO1Q8IYX7 474 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 TPRX1Q8N7U7 411 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 ASCC1Q8N9N2 400 aaKnown RBP7.97□□□□□ -1.13
HDAC3-208ENST00000476739 ZSCAN4Q8NAM6 433 aaPredicted RBP7.97□□□□□ -1.13
HDAC3-208ENST00000476739 PXT1Q8NFP0 134 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 OR4S1Q8NGB4 309 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 UFD1Q92890 307 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 ZNF48Q96MX3 618 aaPredicted RBP7.97□□□□□ -1.13
HDAC3-208ENST00000476739 GPER1Q99527 375 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 MGLLQ99685 303 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 MDFIQ99750 246 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 WDR12Q9GZL7 423 aaKnown RBP7.97□□□□□ -1.13
HDAC3-208ENST00000476739 CHST6Q9GZX3 395 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 ACOT13Q9NPJ3 140 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 SIRT7Q9NRC8 400 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 ZNF581Q9P0T4 197 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 ING4Q9UNL4 249 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 FOXJ3Q9UPW0 622 aa7.97□□□□□ -1.13
HDAC3-208ENST00000476739 DSCAML1Q8TD84 2053 aa7.96□□□□□ -1.13
HDAC3-208ENST00000476739 MDFIC2A0A1B0GVS7 189 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 A0A1W2PQ09 198 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 FAM172BPA6NC97 362 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 TRIM64CA6NLI5 447 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 VENTXO95231 258 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 OR2H2O95918 312 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 CCL3L1P16619 93 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 CPEP16870 476 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 PTGFRP43088 359 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 OR3A1P47881 315 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 SCN1BQ07699 218 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 MLLT11Q13015 90 aaPredicted RBP7.96□□□□□ -1.14
HDAC3-208ENST00000476739 KLRD1Q13241 179 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 GPR50Q13585 617 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 ZNF846Q147U1 533 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 SSX1Q16384 188 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 PIGYQ3MUY2 71 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 SMUG1Q53HV7 270 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 SPIN3Q5JUX0 258 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 TMEM200BQ69YZ2 307 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 ELP2Q6IA86 826 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 TCF23Q7RTU1 214 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 VMO1Q7Z5L0 202 aa7.96□□□□□ -1.14
HDAC3-208ENST00000476739 CEACAM19Q7Z692 300 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms