RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 LIN9Q5TKA1 542 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 TPGS1Q6ZTW0 290 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 GALNT10Q86SR1 603 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 TRIML2Q8N7C3 387 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 CDRT4Q8N9R6 151 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 OR8S1Q8NH09 359 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 CCL17Q92583 94 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 TVP23CQ96ET8 276 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF75AQ96N20 296 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 OR2V2Q96R30 315 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 POMKQ9H5K3 350 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 PLEKHA1Q9HB21 404 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 TMBIM4Q9HC24 238 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 DNAJC27Q9NZQ0 273 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF391Q9UJN7 358 aa1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 NXT1Q9UKK6 140 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-212ENST00000474059 SVILO95425 2214 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 LTBP4Q8N2S1 1624 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 H3BQ85 93 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 ENTPD6O75354 484 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 MYO1DO94832 1006 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 TRGV3P03979 118 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 CCL23P55773 120 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 KLF3P57682 345 aaPredicted RBP1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 VSNL1P62760 191 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 ENDOGQ14249 297 aaKnown RBP1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 TMEM241Q24JQ0 296 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 DEFB134Q4QY38 66 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 FBXO48Q5FWF7 155 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 SPIN3Q5JUX0 258 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF660Q6AZW8 331 aaPredicted RBP1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 GLYATQ6IB77 296 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF773Q6PK81 442 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 Q6ZT83 130 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 AMN1Q8IY45 258 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF664Q8N3J9 261 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 SPICQ8N5J4 248 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 OR8G5Q8NG78 346 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 OR2M3Q8NG83 312 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 OR8A1Q8NGG7 326 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 OR6K3Q8NGY3 331 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 OR2AE1Q8NHA4 323 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 NELFBQ8WX92 580 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 TMIGD2Q96BF3 282 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 C19orf60Q96EN9 201 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 YPEL4Q96NS1 127 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF436Q9C0F3 470 aaPredicted RBP1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 DIABLOQ9NR28 239 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 CYB5R1Q9UHQ9 305 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 SLC22A14Q9Y267 594 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 R4GN34 69 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 SSH2Q76I76 1423 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 NRCAMQ92823 1304 aa1.38□□□□□ -2.19
CCDC88A-212ENST00000474059 VWA8A3KMH1 1905 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 MYBPHLA2RUH7 354 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 CD300LBA8K4G0 201 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 SHOX2O60902 331 aaPredicted RBP1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 CST4P01036 141 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 IGLV6-57P01721 117 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 APOA1P02647 267 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 SOD3P08294 240 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 PTHLHP12272 177 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 PRTN3P24158 256 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 IL12BP29460 328 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 MAGEA3P43357 314 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 LGALS7P47929 136 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 TTPAP49638 278 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 UBE2KP61086 200 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 SLC9A3R2Q15599 337 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 PSG3Q16557 428 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 KRTAP6-3Q3LI67 103 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 TTMPQ5BVD1 217 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 PDZD11Q5EBL8 140 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 HBMQ6B0K9 141 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 WDR59Q6PJI9 974 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 SSX6Q7RTT6 188 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 PAGE2Q7Z2X7 111 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 ZFP82Q8N141 532 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 OR2Y1Q8NGV0 311 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 C2orf15Q8WU43 125 aaKnown RBP1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 OR5P2Q8WZ92 322 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 ZMYND19Q96E35 227 aaPredicted RBP1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 BIRC8Q96P09 236 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 LINC01587Q99440 93 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 TM2D3Q9BRN9 247 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 ANAPC13Q9BS18 74 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 ULBP1Q9BZM6 244 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 DSN1Q9H410 356 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 DUSP21Q9H596 190 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF586Q9NXT0 402 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 MRM2Q9UI43 246 aaKnown RBP1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 POFUT2Q9Y2G5 429 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 TRAPPC1Q9Y5R8 145 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 ICOSQ9Y6W8 199 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 NACADO15069 1562 aa1.37□□□□□ -2.19
CCDC88A-212ENST00000474059 IGHV3-43A0A0B4J1X8 118 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 PGPA6NDG6 321 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF729A6NN14 1252 aaPredicted RBP1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 A8MWP4 228 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF879B4DU55 563 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms