RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 RBP4P02753 201 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 PRKACBP22694 351 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 GLIPR1P48060 266 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 GTF2A1P52655 376 aaPredicted RBP13.42□□□□□ -0.26
USP40-212ENST00000473191 ZP1P60852 638 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 MEF2CQ06413 473 aaPredicted RBP13.42□□□□□ -0.26
USP40-212ENST00000473191 AESQ08117 197 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 IL18R1Q13478 541 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 SMN1Q16637 294 aaKnown RBP13.42□□□□□ -0.26
USP40-212ENST00000473191 TMEM95Q3KNT9 176 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 XAF1Q6GPH4 301 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 ZFP1Q6P2D0 407 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 Q6P435 159 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 CCDC121Q6ZUS5 278 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 Q8IYB0 196 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 OR52I1Q8NGK6 324 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 CFHR4Q92496 578 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 SPSB1Q96BD6 273 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 MALSU1Q96EH3 234 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 SEBOXQ9HB31 216 aaPredicted RBP13.42□□□□□ -0.26
USP40-212ENST00000473191 S100A14Q9HCY8 104 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 ERVK13-1Q9NX77 482 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 SESN1Q9Y6P5 492 aa13.42□□□□□ -0.26
USP40-212ENST00000473191 LOC100130705A0A1B0GUX0 176 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 MGST3O14880 152 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 CSF1P09603 554 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 CD24P25063 80 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 P2RX3P56373 397 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 BLCAPP62952 87 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 SCN1BQ07699 218 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 C2orf68Q2NKX9 166 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 LPCAT4Q643R3 524 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 TRAPPC6BQ86SZ2 158 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 OR51A2Q8NGJ7 313 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 OR4P4Q8NGL7 312 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 OR2T6Q8NHC8 308 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 RGP1Q92546 391 aaPredicted RBP13.41□□□□□ -0.26
USP40-212ENST00000473191 COQ2Q96H96 371 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 OR5M11Q96RB7 305 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 CDCA4Q9BXL8 241 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 NPFFR1Q9GZQ6 430 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 PPIL3Q9H2H8 161 aaKnown RBP13.41□□□□□ -0.26
USP40-212ENST00000473191 TMEM133Q9H2Q1 129 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 ZCCHC4Q9H5U6 513 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 RANBP3Q9H6Z4 567 aaPredicted RBP13.41□□□□□ -0.26
USP40-212ENST00000473191 EXOSC4Q9NPD3 245 aaKnown RBP13.41□□□□□ -0.26
USP40-212ENST00000473191 FAM118AQ9NWS6 357 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 ZNF581Q9P0T4 197 aa13.41□□□□□ -0.26
USP40-212ENST00000473191 A0A0G2JK05 382 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 CYB5AP00167 134 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 MT-ND2P03891 347 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 CD28P10747 220 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 CDK5R1Q15078 307 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 SPIN3Q5JUX0 258 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 Q6ZTK2 550 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 PQLC1Q8N2U9 271 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 C9orf16Q9BUW7 83 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 COMMD4Q9H0A8 199 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 NEK6Q9HC98 313 aa13.4□□□□□ -0.26
USP40-212ENST00000473191 G3V4G9 280 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 SLC33A1O00400 549 aaPredicted RBP13.39□□□□□ -0.27
USP40-212ENST00000473191 HSPB6O14558 160 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 SH2D1BO14796 132 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 WBP4O75554 376 aaKnown RBP13.39□□□□□ -0.27
USP40-212ENST00000473191 CLIC3O95833 236 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 HCKP08631 526 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 OCM2P0CE71 109 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 OCMP0CE72 109 aaPredicted RBP13.39□□□□□ -0.27
USP40-212ENST00000473191 ZNF44P15621 663 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 LMO1P25800 156 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 ERP29P30040 261 aaKnown RBP13.39□□□□□ -0.27
USP40-212ENST00000473191 SLC34A1Q06495 639 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 ATXN7L3Q14CW9 347 aaPredicted RBP13.39□□□□□ -0.27
USP40-212ENST00000473191 KISS1Q15726 138 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 LIAT1Q6ZQX7 453 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 ZBTB49Q6ZSB9 765 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 Q8N2B8 174 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 SYS1Q8N2H4 156 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 NDNFQ8TB73 568 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 RPS4Y2Q8TD47 263 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 WIPF2Q8TF74 440 aaPredicted RBP13.39□□□□□ -0.27
USP40-212ENST00000473191 CLEC7AQ9BXN2 247 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 ZNF286AQ9HBT8 521 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 RAB18Q9NP72 206 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 ABCB10Q9NRK6 738 aa13.39□□□□□ -0.27
USP40-212ENST00000473191 LIMS3P0CW19 117 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 LIMS4P0CW20 117 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 CDK2P24941 298 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 SOX2P48431 317 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 ZSCAN26Q16670 478 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 C17orf58Q2M2W7 97 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 ABHD12Q8N2K0 398 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 PARP16Q8N5Y8 322 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 OR10K1Q8NGX5 313 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 OR5AK2Q8NH90 309 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 FOXRED1Q96CU9 486 aaPredicted RBP13.38□□□□□ -0.27
USP40-212ENST00000473191 ORAI1Q96D31 301 aa13.38□□□□□ -0.27
USP40-212ENST00000473191 MRPS18AQ9NVS2 196 aaKnown RBP13.38□□□□□ -0.27
USP40-212ENST00000473191 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.38□□□□□ -0.27
USP40-212ENST00000473191 UBE2J1Q9Y385 318 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms