RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 RFT1Q96AA3 541 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 RHOFQ9HBH0 211 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 SERTAD4Q9NUC0 356 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 UBE2J1Q9Y385 318 aaPredicted RBP13.14□□□□□ -0.31
COL9A3-208ENST00000469802 MINOS1-NBL1R4GNA1 71 aa13.14□□□□□ -0.31
COL9A3-208ENST00000469802 SIRPB1O00241 398 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 MPZL2O60487 215 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 MMP23AO75900 390 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 ALX3O95076 343 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 ZFPL1O95159 310 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 CSN2P05814 226 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 CALCBP10092 127 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 RAB13P51153 203 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 SNU13P55769 128 aaKnown RBP13.13□□□□□ -0.31
COL9A3-208ENST00000469802 ZP1P60852 638 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 FAM189A2Q15884 450 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 LHFPL3Q86UP9 236 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 OR5D18Q8NGL1 313 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 OR4P4Q8NGL7 312 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 FAM110DQ8TAY7 271 aaPredicted RBP13.13□□□□□ -0.31
COL9A3-208ENST00000469802 WIPF2Q8TF74 440 aaPredicted RBP13.13□□□□□ -0.31
COL9A3-208ENST00000469802 MRPL48Q96GC5 212 aaKnown RBP13.13□□□□□ -0.31
COL9A3-208ENST00000469802 SPACA5Q96QH8 159 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 SLC29A1Q99808 456 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 C9orf16Q9BUW7 83 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 CLEC7AQ9BXN2 247 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 TMEM133Q9H2Q1 129 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 ZCCHC4Q9H5U6 513 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 ISG20L2Q9H9L3 353 aaKnown RBP13.13□□□□□ -0.31
COL9A3-208ENST00000469802 EXOSC4Q9NPD3 245 aaKnown RBP13.13□□□□□ -0.31
COL9A3-208ENST00000469802 INPP5EQ9NRR6 644 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 ERVK13-1Q9NX77 482 aa13.13□□□□□ -0.31
COL9A3-208ENST00000469802 JUNBP17275 347 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-208ENST00000469802 RAB40BQ12829 278 aa13.12□□□□□ -0.31
COL9A3-208ENST00000469802 DYNC1I2Q13409 638 aaKnown RBP13.12□□□□□ -0.31
COL9A3-208ENST00000469802 CCDC121Q6ZUS5 278 aa13.12□□□□□ -0.31
COL9A3-208ENST00000469802 TMEM219Q86XT9 240 aa13.12□□□□□ -0.31
COL9A3-208ENST00000469802 PARP16Q8N5Y8 322 aa13.12□□□□□ -0.31
COL9A3-208ENST00000469802 CORO2AQ92828 525 aa13.12□□□□□ -0.31
COL9A3-208ENST00000469802 MYCBPQ99417 103 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-208ENST00000469802 ABCB10Q9NRK6 738 aa13.12□□□□□ -0.31
COL9A3-208ENST00000469802 MRPS18AQ9NVS2 196 aaKnown RBP13.12□□□□□ -0.31
COL9A3-208ENST00000469802 GLS2Q9UI32 602 aa13.12□□□□□ -0.31
COL9A3-208ENST00000469802 PITPNC1Q9UKF7 332 aa13.12□□□□□ -0.31
COL9A3-208ENST00000469802 GSTK1Q9Y2Q3 226 aa13.12□□□□□ -0.31
COL9A3-208ENST00000469802 TMEM212A6NML5 194 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 FAM90A22PA8MWA6 464 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 E9PI62 339 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 SH2D1BO14796 132 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 FADS2O95864 444 aaKnown RBP13.11□□□□□ -0.31
COL9A3-208ENST00000469802 RPSAP08865 295 aaKnown RBP13.11□□□□□ -0.31
COL9A3-208ENST00000469802 MRPL28Q13084 256 aaKnown RBP13.11□□□□□ -0.31
COL9A3-208ENST00000469802 HABP2Q14520 560 aaPredicted RBP13.11□□□□□ -0.31
COL9A3-208ENST00000469802 HIST2H2BDQ6DRA6 164 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 ZNF529Q6P280 563 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 Q6P435 159 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 HEPN1Q6WQI6 88 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 ZBTB49Q6ZSB9 765 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 PQLC1Q8N2U9 271 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 APH1BQ8WW43 257 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 COQ2Q96H96 371 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 Q96MT0 163 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 NKX3-1Q99801 234 aaPredicted RBP13.11□□□□□ -0.31
COL9A3-208ENST00000469802 JAM3Q9BX67 310 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 S100A14Q9HCY8 104 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 AMBNQ9NP70 447 aa13.11□□□□□ -0.31
COL9A3-208ENST00000469802 TRGV10A0A0A0MS01 117 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 LOC100130705A0A1B0GUX0 176 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 F2RL2O00254 374 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 SLC33A1O00400 549 aaPredicted RBP13.1□□□□□ -0.31
COL9A3-208ENST00000469802 SULT1B1O43704 296 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 OPN1MWP04001 364 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 OCM2P0CE71 109 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 OCMP0CE72 109 aaPredicted RBP13.1□□□□□ -0.31
COL9A3-208ENST00000469802 OPN1MW2P0DN77 364 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 OPN1MW3P0DN78 364 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 VSIG10L2P0DP72 767 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 CD34P28906 385 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 CDK5R1Q15078 307 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 KISS1Q15726 138 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 PRAMEF5Q5TYX0 476 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 BAIAP2L2Q6UXY1 529 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 TRAPPC6BQ86SZ2 158 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 C10orf67Q8IYJ2 551 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 C11orf44Q8N8P7 122 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 CHST4Q8NCG5 386 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 OR52I1Q8NGK6 324 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 RGP1Q92546 391 aaPredicted RBP13.1□□□□□ -0.31
COL9A3-208ENST00000469802 PDCD1LG2Q9BQ51 273 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 WNT10AQ9GZT5 417 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 GAL3ST2Q9H3Q3 398 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 NEK6Q9HC98 313 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 FAM118AQ9NWS6 357 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 TAS2R3Q9NYW6 316 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 PCDHGB5Q9Y5G0 923 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 HILPDAQ9Y5L2 63 aa13.1□□□□□ -0.31
COL9A3-208ENST00000469802 A0A0G2JK05 382 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 ODAMA1E959 279 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 FUOMA2VDF0 154 aa13.09□□□□□ -0.31
COL9A3-208ENST00000469802 IGLV1-47P01700 117 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms