RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 IL13RA2Q14627 380 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 C1orf100Q5SVJ3 147 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 C22orf42Q6IC83 251 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 Q6P435 159 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 C17orf107Q6ZR85 190 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 C1orf229Q6ZS94 237 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-204ENST00000469054 OSR2Q8N2R0 312 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 LY6G5BQ8NDX9 201 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 OR5D13Q8NGL4 314 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 PPP1R35Q8TAP8 253 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 TBC1D15Q8TC07 691 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 H1FXQ92522 213 aaKnown RBP9.88□□□□□ -0.83
VPS13D-204ENST00000469054 DMRTB1Q96MA1 342 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 C1orf147Q96MC9 270 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-204ENST00000469054 GFI1Q99684 422 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 MRI1Q9BV20 369 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 BEX2Q9BXY8 128 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 OR51E2Q9H255 320 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 TXNL4BQ9NX01 149 aaKnown RBP9.88□□□□□ -0.83
VPS13D-204ENST00000469054 GHRLQ9UBU3 117 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 OPN4Q9UHM6 478 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 AUP1Q9Y679 476 aa9.88□□□□□ -0.83
VPS13D-204ENST00000469054 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.88□□□□□ -0.832e-8■■■■■ 31.6
VPS13D-204ENST00000469054 ABCA2Q9BZC7 2435 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 TLN2Q9Y4G6 2542 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 TRBV23-1A0A0A0MS06 115 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 A0A1W2PP11 408 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 SHISA3A0PJX4 238 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 SIRPB1O00241 398 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 PSPNO60542 156 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 PPIAL4GP0DN37 164 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 HNF1AP20823 631 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 GABRR1P24046 479 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 HTR2CP28335 458 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 SCN1BQ07699 218 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 PDCD1Q15116 288 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 PIGYQ3MUY2 71 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 CHRFAM7AQ494W8 412 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 NHLRC3Q5JS37 347 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 OR8H2Q8N162 312 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 TEX29Q8N6K0 151 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 CHST4Q8NCG5 386 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 C8orf46Q8TAG6 207 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 MRPS24Q96EL2 167 aaKnown RBP9.87□□□□□ -0.83
VPS13D-204ENST00000469054 ST3GAL6Q9Y274 331 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 V9GY05 133 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 MTORP42345 2549 aa9.87□□□□□ -0.83
VPS13D-204ENST00000469054 TEP1Q99973 2627 aaKnown RBP9.86□□□□□ -0.83
VPS13D-204ENST00000469054 SVEP1Q4LDE5 3571 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 A0A0G2JK05 382 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 SLC33A1O00400 549 aaPredicted RBP9.86□□□□□ -0.83
VPS13D-204ENST00000469054 SLC17A2O00624 439 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 PDCD5O14737 125 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 SLC22A1O15245 554 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 UBBP0CG47 229 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 GADD45AP24522 165 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 RBM11P57052 281 aaKnown RBP9.86□□□□□ -0.83
VPS13D-204ENST00000469054 ARF6P62330 175 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 RPL31P62899 125 aaKnown RBP9.86□□□□□ -0.83
VPS13D-204ENST00000469054 GRK1Q15835 563 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 IL17RELQ6ZVW7 336 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 GDPD3Q7L5L3 318 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 LINC00596Q86U02 117 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 OR4S1Q8NGB4 309 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 OR4M1Q8NGD0 313 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 OR6M1Q8NGM8 313 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 YIPF6Q96EC8 236 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 CHCHD6Q9BRQ6 235 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 MRPS26Q9BYN8 205 aaKnown RBP9.86□□□□□ -0.83
VPS13D-204ENST00000469054 CHST6Q9GZX3 395 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 PLGRKTQ9HBL7 147 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 ZANQ9Y493 2812 aa9.86□□□□□ -0.83
VPS13D-204ENST00000469054 FN1P02751 2386 aaKnown RBP9.85□□□□□ -0.83
VPS13D-204ENST00000469054 TRAV24A0A0B4J272 114 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 LOC100506127A0A0U1RQW1 187 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 A0A1W2PQ09 198 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 MGST3O14880 152 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 GEMIN2O14893 280 aaKnown RBP9.85□□□□□ -0.83
VPS13D-204ENST00000469054 CRTAPO75718 401 aaPredicted RBP9.85□□□□□ -0.83
VPS13D-204ENST00000469054 OR7C1O76099 320 aaPredicted RBP9.85□□□□□ -0.83
VPS13D-204ENST00000469054 VSIG8P0DPA2 414 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 MGMTP16455 207 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 RAB3BP20337 219 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 SRP14P37108 136 aaKnown RBP9.85□□□□□ -0.83
VPS13D-204ENST00000469054 RANBP1P43487 201 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 OR3A1P47881 315 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 EDDM3BP56851 147 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 OR10A3P58181 314 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 TAF9Q16594 264 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 MPV17LQ2QL34 196 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 TIMM50Q3ZCQ8 353 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 GDPGP1Q6ZNW5 385 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 FAM185AQ8N0U4 392 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 TMEM104Q8NE00 496 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 NANPQ8TBE9 248 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 SLC25A28Q96A46 364 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 UPRTQ96BW1 309 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 KCTD7Q96MP8 289 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 CST11Q9H112 138 aa9.85□□□□□ -0.83
VPS13D-204ENST00000469054 BANF2Q9H503 90 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms