RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 OR5T2Q8NGG2 359 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 DYNC2LI1Q8TCX1 351 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 ACOT12Q8WYK0 555 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 AP3S1Q92572 193 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 DGCR14Q96DF8 476 aaKnown RBP12.65□□□□□ -0.38
NPHP4-205ENST00000466897 URM1Q9BTM9 101 aaKnown RBP12.65□□□□□ -0.38
NPHP4-205ENST00000466897 SPACA1Q9HBV2 294 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 BATF3Q9NR55 127 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 CCDC59Q9P031 241 aaKnown RBP12.65□□□□□ -0.38
NPHP4-205ENST00000466897 CTSZQ9UBR2 303 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 OR5V1Q9UGF6 321 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 RAB22AQ9UL26 194 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 SPATA2Q9UM82 520 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 MAB21L2Q9Y586 359 aa12.65□□□□□ -0.38
NPHP4-205ENST00000466897 TMEM272A0A1B0GTI8 110 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 ZNF737O75373 536 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 MPIG6BO95866 241 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 OR2H2O95918 312 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 CSN2P05814 226 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 SOX6P35712 828 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 GABRA2P47869 451 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 LYPD2Q6UXB3 125 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 FAM216BQ8N7L0 139 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 FAM46BQ96A09 425 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 SNX22Q96L94 193 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 CCL13Q99616 98 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 SELENOIQ9C0D9 397 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 LPAR5Q9H1C0 372 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 BANF2Q9H503 90 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 NARFLQ9H6Q4 476 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 RCC2Q9P258 522 aaKnown RBP12.64□□□□□ -0.39
NPHP4-205ENST00000466897 OR14J1Q9UGF5 321 aa12.64□□□□□ -0.39
NPHP4-205ENST00000466897 POLR3KQ9Y2Y1 108 aaPredicted RBP12.64□□□□□ -0.39
NPHP4-205ENST00000466897 MAP1AP78559 2803 aaPredicted RBP12.64□□□□□ -0.39
NPHP4-205ENST00000466897 CREBBPQ92793 2442 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 A6NHS1 94 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 K7N7A8 449 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 GEMIN2O14893 280 aaKnown RBP12.63□□□□□ -0.39
NPHP4-205ENST00000466897 NDUFB3O43676 98 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 GLAP06280 429 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 ZNF182P17025 639 aaPredicted RBP12.63□□□□□ -0.39
NPHP4-205ENST00000466897 KCNJ3P48549 501 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 PITPNBP48739 271 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 PAX5Q02548 391 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 COL10A1Q03692 680 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 IKZF1Q13422 519 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 ESCO2Q56NI9 601 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 LRRC10Q5BKY1 277 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 OR10K2Q6IF99 312 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 OR8H2Q8N162 312 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 PPP1R35Q8TAP8 253 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 LGALS14Q8TCE9 139 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 COX4I2Q96KJ9 171 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 CMTM3Q96MX0 182 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 SSBP3Q9BWW4 388 aaPredicted RBP12.63□□□□□ -0.39
NPHP4-205ENST00000466897 KCNK15Q9H427 330 aa12.63□□□□□ -0.39
NPHP4-205ENST00000466897 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.62□□□□□ -0.392e-7■■■■■ 27.8
NPHP4-205ENST00000466897 A0A0B4J203 849 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 SLC33A1O00400 549 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-205ENST00000466897 DVL1O14640 695 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 DEGS1O15121 323 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 FOXH1O75593 365 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 FCN3O75636 299 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 SCGNO76038 276 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 OR7C1O76099 320 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-205ENST00000466897 PAHP00439 452 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 TK1P04183 234 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 SNRPBP14678 240 aaKnown RBP12.62□□□□□ -0.39
NPHP4-205ENST00000466897 ZNF44P15621 663 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 DUSP1P28562 367 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 IL2RGP31785 369 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 CEBPDP49716 269 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-205ENST00000466897 GNB2P62879 340 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 TAF9Q16594 264 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 WDR25Q64LD2 544 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-205ENST00000466897 C17orf107Q6ZR85 190 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 ZNRF1Q8ND25 227 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 OR5D13Q8NGL4 314 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 DMRTB1Q96MA1 342 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 NUDT16L1Q9BRJ7 211 aaKnown RBP12.62□□□□□ -0.39
NPHP4-205ENST00000466897 SHARPINQ9H0F6 387 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 SLC25A10Q9UBX3 287 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-205ENST00000466897 CLN8Q9UBY8 286 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 METRNQ9UJH8 293 aa12.62□□□□□ -0.39
NPHP4-205ENST00000466897 A0A0A6YYH2 397 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 TRAV24A0A0B4J272 114 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 PPIAL4CA0A0B4J2A2 164 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 A0A1B0GW55 424 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 TMEM82A0PJX8 343 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 METTL21EPA6NDL7 271 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 A6NJ64 397 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 FOXI3A8MTJ6 420 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-205ENST00000466897 KIAA1324LA8MWY0 1029 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-205ENST00000466897 H7C1Q1 480 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 PSPNO60542 156 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 PDCD6O75340 191 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 ECDO95905 644 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-205ENST00000466897 DUX4L2P0CJ85 424 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 DUX4L3P0CJ86 424 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 DUX4L4P0CJ87 422 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms