RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SIRT7Q9NRC8 400 aa9.6□□□□□ -0.87
CUX1-207ENST00000465461 C2CD3Q4AC94 2353 aa9.6□□□□□ -0.87
CUX1-207ENST00000465461 A0A1W2PRD5 423 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 A0A1W2PRF3 423 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 A0A1W2PRM7 423 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 HSPB6O14558 160 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 SH2D1BO14796 132 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 DEGS1O15121 323 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 GPR37O15354 613 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 MRPS14O60783 128 aaKnown RBP9.59□□□□□ -0.87
CUX1-207ENST00000465461 LIPFP07098 398 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 CCL3L1P16619 93 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 SRMP19623 302 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 MAPK3P27361 379 aaPredicted RBP9.59□□□□□ -0.87
CUX1-207ENST00000465461 PSMB9P28065 219 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 OR3A1P47881 315 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 MTNR1BP49286 362 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 EDDM3BP56851 147 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 KLRD1Q13241 179 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 ZNF273Q14593 569 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 GRK1Q15835 563 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 SLC22A6Q4U2R8 563 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 HSD17B12Q53GQ0 312 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 UBE2UQ5VVX9 321 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 ZNF773Q6PK81 442 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 FIP1L1Q6UN15 594 aaKnown RBP9.59□□□□□ -0.87
CUX1-207ENST00000465461 GLIPR1L1Q6UWM5 242 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 LYPD6Q86Y78 171 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 SVOPQ8N4V2 548 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 C8orf46Q8TAG6 207 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 CPNE2Q96FN4 548 aaPredicted RBP9.59□□□□□ -0.87
CUX1-207ENST00000465461 CYYR1Q96J86 154 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 SNX22Q96L94 193 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 METTL9Q9H1A3 318 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 PPA2Q9H2U2 334 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 NUP50Q9UKX7 468 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 MRPS28Q9Y2Q9 187 aaKnown RBP9.59□□□□□ -0.87
CUX1-207ENST00000465461 NF1P21359 2839 aa9.59□□□□□ -0.87
CUX1-207ENST00000465461 A0A0G2JK05 382 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 CENPVL3A0A0U1RRI6 287 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 MDFIC2A0A1B0GVS7 189 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 SLC33A1O00400 549 aaPredicted RBP9.58□□□□□ -0.88
CUX1-207ENST00000465461 IFNA2P01563 188 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 UCHL1P09936 223 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 GABRA5P31644 462 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 RPL31P62899 125 aaKnown RBP9.58□□□□□ -0.88
CUX1-207ENST00000465461 NEDD8Q15843 81 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 SPIN3Q5JUX0 258 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 AWAT2Q6E213 333 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 ELP2Q6IA86 826 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 BRICD5Q6PL45 260 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 GDPD3Q7L5L3 318 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 TCF23Q7RTU1 214 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 OR8H2Q8N162 312 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 PNKDQ8N490 385 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 BPIFB2Q8N4F0 458 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 S100A13Q99584 98 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 GFI1Q99684 422 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 MS4A7Q9GZW8 240 aaPredicted RBP9.58□□□□□ -0.88
CUX1-207ENST00000465461 FAM234AQ9H0X4 552 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 KCNK15Q9H427 330 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 BANF2Q9H503 90 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 GLS2Q9UI32 602 aa9.58□□□□□ -0.88
CUX1-207ENST00000465461 AK6Q9Y3D8 172 aaKnown RBP9.58□□□□□ -0.88
CUX1-207ENST00000465461 CUBNO60494 3623 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 TRAV24A0A0B4J272 114 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 SHISA3A0PJX4 238 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 GEMIN2O14893 280 aaKnown RBP9.57□□□□□ -0.88
CUX1-207ENST00000465461 VENTXO95231 258 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 CSTBP04080 98 aaKnown RBP9.57□□□□□ -0.88
CUX1-207ENST00000465461 CALRP27797 417 aaKnown RBP9.57□□□□□ -0.88
CUX1-207ENST00000465461 AESQ08117 197 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 ATXN7L3Q14CW9 347 aaPredicted RBP9.57□□□□□ -0.88
CUX1-207ENST00000465461 C11orf91Q3C1V1 193 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 KCTD21Q4G0X4 260 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 OR10K2Q6IF99 312 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 OSR2Q8N2R0 312 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 C1orf147Q96MC9 270 aaPredicted RBP9.57□□□□□ -0.88
CUX1-207ENST00000465461 ZNF48Q96MX3 618 aaPredicted RBP9.57□□□□□ -0.88
CUX1-207ENST00000465461 RHOFQ9HBH0 211 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 NDUFB11Q9NX14 153 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 ST3GAL6Q9Y274 331 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 KPTNQ9Y664 436 aa9.57□□□□□ -0.88
CUX1-207ENST00000465461 NIPBLQ6KC79 2804 aaeCLIP9.57□□□□□ -0.88
CUX1-207ENST00000465461 NAV3Q8IVL0 2385 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 TRBV23-1A0A0A0MS06 115 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 RNASEK-C17orf49H0YIS7 233 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 CCRL2O00421 344 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 LMO1P25800 156 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 GLIPR1P48060 266 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 TRAM1Q15629 374 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 TAF9Q16594 264 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 GPR157Q5UAW9 335 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 C22orf42Q6IC83 251 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 ZNF782Q6ZMW2 699 aaPredicted RBP9.56□□□□□ -0.88
CUX1-207ENST00000465461 CMTM4Q8IZR5 234 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 C11orf42Q8N5U0 333 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 TEX29Q8N6K0 151 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 SIGLECL1Q8N7X8 197 aa9.56□□□□□ -0.88
CUX1-207ENST00000465461 NKAIN3Q8N8D7 197 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms