RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 IGKV1D-12P01611 117 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 ATF1P18846 271 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 ATP6V1E1P36543 226 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 GDNFP39905 211 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 MTCP1P56278 107 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 CCDC121Q6ZUS5 278 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 C16orf82Q7Z2V1 217 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 RNF144BQ7Z419 303 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 AMIGO2Q86SJ2 522 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 ABHD12Q8N2K0 398 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 BCAS4Q8TDM0 211 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 RFT1Q96AA3 541 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 EME1Q96AY2 570 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 LIN7BQ9HAP6 207 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 HMG20AQ9NP66 347 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 DPM3Q9P2X0 92 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 ENOPH1Q9UHY7 261 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 GSTK1Q9Y2Q3 226 aa12.86□□□□□ -0.35
COL7A1-204ENST00000462475 TRGV10A0A0A0MS01 117 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 SH2D7A6NKC9 451 aaPredicted RBP12.85□□□□□ -0.35
COL7A1-204ENST00000462475 MPIG6BO95866 241 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 OR2H2O95918 312 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 LPLP06858 475 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 CDK2P24941 298 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 FASP25445 335 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 BDH1Q02338 343 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 ABCA11PQ4W5N1 156 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 C10orf99Q6UWK7 81 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 HEPN1Q6WQI6 88 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 LHFPL2Q6ZUX7 228 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 UTS2BQ765I0 119 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 OR8J1Q8NGP2 316 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 OR2G2Q8NGZ5 317 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 MYDGFQ969H8 173 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 FGGYQ96C11 551 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 AKR1E2Q96JD6 320 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 SLC25A33Q9BSK2 321 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 GABARAPL3Q9BY60 117 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 GAL3ST2Q9H3Q3 398 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 RIBC2Q9H4K1 309 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 ZNF286AQ9HBT8 521 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 EXOSC4Q9NPD3 245 aaKnown RBP12.85□□□□□ -0.35
COL7A1-204ENST00000462475 GLS2Q9UI32 602 aa12.85□□□□□ -0.35
COL7A1-204ENST00000462475 DNAH9Q9NYC9 4486 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 NBEAL2Q6ZNJ1 2754 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 TCRBV4S1A1TA0A5B7 111 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 H3BUI4 141 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 K7EIL1 84 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 IGLV1-47P01700 117 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 AMY1AP04745 511 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 AMY2AP04746 511 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 ZNF20P17024 532 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 PRKACBP22694 351 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 BRS3P32247 399 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 GLIPR1P48060 266 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 NANOS3P60323 173 aaKnown RBP12.84□□□□□ -0.35
COL7A1-204ENST00000462475 CDC42P60953 191 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 AESQ08117 197 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 PDZK1IP1Q13113 114 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 UTF1Q5T230 341 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 OR52W1Q6IF63 320 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 CENPVQ7Z7K6 275 aaPredicted RBP12.84□□□□□ -0.35
COL7A1-204ENST00000462475 RTN4RL2Q86UN3 420 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 OR5D18Q8NGL1 313 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 OR10AC1Q8NH08 325 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 ZNF596Q8TC21 504 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 CAPSLQ8WWF8 208 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 SPSB1Q96BD6 273 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 OPALINQ96PE5 141 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 SPACA5Q96QH8 159 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 MBOAT4Q96T53 435 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 FRRS1LQ9P0K9 344 aa12.84□□□□□ -0.35
COL7A1-204ENST00000462475 TSSC4Q9Y5U2 329 aaPredicted RBP12.84□□□□□ -0.35
COL7A1-204ENST00000462475 SH2D1BO14796 132 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 KDM4BO94953 1096 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 OR2F2O95006 317 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 PF4P02776 101 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 CD34P28906 385 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 TMED1Q13445 227 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 TMEM244Q5VVB8 128 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 OR51A4Q8NGJ6 313 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 CORO2AQ92828 525 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 STMN2Q93045 179 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 RBM14Q96PK6 669 aaKnown RBP12.83□□□□□ -0.36
COL7A1-204ENST00000462475 COMMD4Q9H0A8 199 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 ING3Q9NXR8 418 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 TAS2R3Q9NYW6 316 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 OAZ3Q9UMX2 235 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 AP4S1Q9Y587 144 aa12.83□□□□□ -0.36
COL7A1-204ENST00000462475 ODAMA1E959 279 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 LEUTXA8MZ59 168 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 ISG15P05161 165 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 ZNF44P15621 663 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 PTGFRP43088 359 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 SLC35A2P78381 396 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 HLA-DRB5Q30154 266 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 KHDC1LQ5JSQ8 128 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 TPTE2P1Q5T6R2 138 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 OR4X2Q8NGF9 303 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 OR13C9Q8NGT0 318 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms